View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20326_low_1 (Length: 945)
Name: NF20326_low_1
Description: NF20326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20326_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 862; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 862; E-Value: 0
Query Start/End: Original strand, 17 - 926
Target Start/End: Original strand, 21122624 - 21123533
Alignment:
| Q |
17 |
aagaactccaaacattaggagcattcaaggacaaattgcagatatgttaaactttaaattgggggaagaaagtgaagatggaagagcacaacgtctatgg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21122624 |
aagaactccaaacattaggagcattcaaggacaaattgcagatatgttaaacttgaaattgggggaagaaagtgaagatggaagagcacaacgtctatgg |
21122723 |
T |
|
| Q |
117 |
ttgcgtttaaaagaaataaagagaactcttataatagttgacaatctatggagagagtttcatttgaaggatacagggattcgcttaaacaatgataata |
216 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
21122724 |
ttgcgtttaaaagaaatgaagagaactcttataatagttgacaatctatggagagagtttcatttgaaggatacagggattcgcttatacaatgataata |
21122823 |
T |
|
| Q |
217 |
gaggtgcattgaaaatccttgtaaccacacgtattgagaatgtttgtaatttaatgaattgtcaaaagaagattcatttggggctcttgtccaaagatga |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
21122824 |
gaggtgcattgaaaatccttgtaaccacacgtattgagaatgtttgtattttaatgaattgtcacaagatgattcatttggggctcttgtccaaagatga |
21122923 |
T |
|
| Q |
317 |
atcctggacattcttccaaaagcttgcagtaattgatgacgaattctctgtgtcattagatggtgtaccacaagaaatctgctatgaatgcaagggactt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21122924 |
atcctggacattcttccaaaagcttgcagtaattgatgacgaattctctgtgtcattagatggtgtaccacaagaaatctgctatgaatgcaagggactt |
21123023 |
T |
|
| Q |
417 |
cccttagcaatcaaaactatgtcttcttccttaaaaggaaaggataatactgagtggaattcaacattatctaagttgatggtttcaaaggcatctgatg |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
21123024 |
cccttagcaatcaaaactatgtcttcttccttaaaaggaaaggataataatgagtggaattcaacattagctaagttgatggtttcaaaggcatctgatg |
21123123 |
T |
|
| Q |
517 |
atcatgaaggaggagagagcgatgctttaaattgtatcaagtccagctatgagtgtttacaaaatagagcagcagaactgatatttctgatgtgctgtat |
616 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
21123124 |
atcatgaaggaggagagagcgatgctttaaattgtatcaagtccagctatgagtgtttacaaaatagagaagcagaacagatatttctgatgtgctgtat |
21123223 |
T |
|
| Q |
617 |
gtttcttgaagactatcacatcccagtagaagatttgttgaggtatgaaattggagtaggtgtaggaagaacatactcattgcagttaaggaggagcatg |
716 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21123224 |
gtttcttgaagactatcacatcccagtagaagatttgttgaggtatgaaattggagtaggtgtaggaagaacatactcattgcagttaaggaggagcatg |
21123323 |
T |
|
| Q |
717 |
ttccaagcacgcataaacaaacttctggattcttgtttgctgatgcatggtagcgtgaagatgcatgacatggttcgcgacacagccttatggatcgcaa |
816 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21123324 |
ttccaagcacacataaacaaacttctggattctcgtttgctgatgcatggtagcgtgaagatgcatgacatggttcgcgacacagccttatggatcgcaa |
21123423 |
T |
|
| Q |
817 |
atagatcaaataattgtaaaatcttggtaaatgttgacaaaccactcagcattgtggcagaagataaaaatataagagattgttttgcagtatcttcatg |
916 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21123424 |
atagatcaaataattgtaaaatcttggtaaatgttgacaaaccactcagcattgtggcagaagataaaaatataagagattgttttgcagtatcttcatg |
21123523 |
T |
|
| Q |
917 |
gtgggagaat |
926 |
Q |
| |
|
|||||||||| |
|
|
| T |
21123524 |
gtgggagaat |
21123533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 20 - 436
Target Start/End: Original strand, 21115200 - 21115616
Alignment:
| Q |
20 |
aactccaaacattaggagcattcaaggacaaattgcagatatgttaaactttaaattgggggaagaaagtgaagatggaagagcacaacgtctatggttg |
119 |
Q |
| |
|
||||||||| ||||| ||||||| ||| || ||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
21115200 |
aactccaaatattagaggcattcagggaaaacttgcagatatgttaaacttgaaattggaggaagaaagtgaagagggaagagcacaacgtttatggttg |
21115299 |
T |
|
| Q |
120 |
cgtttaaaagaaataaagagaactcttataatagttgacaatctatggagagagtttcatttgaaggatacagggattcgcttaaacaatgataatagag |
219 |
Q |
| |
|
|||||||| ||| ||| ||| |||||||||||| ||| |||||||||||||||||||||||| ||| |||||||| | || |||||| ||| ||| |
|
|
| T |
21115300 |
tgtttaaaacaaaagaagcgaattcttataatagtggacgatctatggagagagtttcatttgataaatatagggattctcgtagacaatgttaa-cgag |
21115398 |
T |
|
| Q |
220 |
-gtgcattgaaaatccttgtaaccacacgtattgagaatgtttgtaatttaatgaattgtcaaaagaagattcatttggggctcttgtccaaagatgaat |
318 |
Q |
| |
|
||| ||| |||| ||||||| |||| |||| |||| |||| | |||| | |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
21115399 |
cacacatggaaggtcctgataaccactcgtaatgagcatgtctgtacatcaatggactgtcaaaagaagattcatttggggctcttgtctgaagatgaat |
21115498 |
T |
|
| Q |
319 |
cctggacattcttccaaaagcttgcagtaattgatgacgaattctctgtgtcattagatggtgtaccacaagaaatctgctatgaatgcaagggacttcc |
418 |
Q |
| |
|
| |||||||| ||||||||| ||||| |||||||||||||| ||| || ||| |||||||| |||| ||| ||||| |||| || || |||||||| |
|
|
| T |
21115499 |
cttggacattattccaaaagtttgcaagaattgatgacgaatactccaagttattggatggtgtgccacgggaagtctgcaatgagtgtaatggacttcc |
21115598 |
T |
|
| Q |
419 |
cttagcaatcaaaactat |
436 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
21115599 |
cttatcaatcaaaactat |
21115616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 624 - 920
Target Start/End: Original strand, 21115804 - 21116100
Alignment:
| Q |
624 |
gaagactatcacatcccagtagaagatttgttgaggtatgaaattggagtaggtgtaggaagaacatactcattgcagttaaggaggagcatgttccaag |
723 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||| || | ||||| ||||| | ||| || || ||||| |||| || ||||||| || | |||| |
|
|
| T |
21115804 |
gaagactatcacatcccaacagaagatttgatgaggtttgcatttggactaggtatgggagaaaaattatcattacagtcaatgaggagcttgattcaag |
21115903 |
T |
|
| Q |
724 |
cacgcataaacaaacttctggattcttgtttgctgatgcatggtagcgtgaagatgcatgacatggttcgcgacacagccttatggatcgcaaatagatc |
823 |
Q |
| |
|
|| |||||||||||| | |||||||||||| | | || |||| ||||||||||||| ||||||||| || |||| ||||||||| ||||||| ||| |
|
|
| T |
21115904 |
cagacataaacaaactcttcgattcttgtttgttcacgcctggttctgtgaagatgcatggcatggttcgtgagacagtcttatggattgcaaatacatc |
21116003 |
T |
|
| Q |
824 |
aaataattgtaaaatcttggtaaatgttgacaaaccactcagcattgtggcagaagataaaaatataagagattgttttgcagtatcttcatggtgg |
920 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||||||| |||| | | ||||| ||||| || |||||||| |||||| || |||| ||||||||| |
|
|
| T |
21116004 |
agataattgcaaaatcttggtaaatgttgacaaaccacttagcactttagcagaggataacaaaataagagaatgttttacattatcctcatggtgg |
21116100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 38 - 473
Target Start/End: Complemental strand, 21715745 - 21715310
Alignment:
| Q |
38 |
cattcaaggacaaattgcagatatgttaaactttaaattgggggaagaaagtgaagatggaagagcacaacgtctatggttgcgtttaaaagaaataaag |
137 |
Q |
| |
|
|||||||||| |||| ||||| ||||||||||| ||| | ||||||||| ||||| |||||||||||||| | |||||| |||| ||||||| || |
|
|
| T |
21715745 |
cattcaaggaaaaatggcagacatgttaaacttgaaactcaaggaagaaagcgaagagggaagagcacaacggttgtggttgagtttgaaagaaaataaa |
21715646 |
T |
|
| Q |
138 |
agaactcttataatagttgacaatctatggagagagtttcatttgaaggatacagggattcgcttaaacaatgataatagaggtgcattgaaaatccttg |
237 |
Q |
| |
|
||| |||| | ||| |||| || |||||| ||||||| |||||| | ||| |||||||| | || |||||| ||| | || |||| ||||||||||| |
|
|
| T |
21715645 |
cgaattcttgttataattgatgatttatggaaagagtttaatttgatgaatatagggattcacatagacaatgttaacaagggcgcatggaaaatccttg |
21715546 |
T |
|
| Q |
238 |
taaccacacgtattgagaatgtttgtaatttaatgaattgtcaaaagaagattcatttggggctcttgtccaaagatgaatcctggacattcttccaaaa |
337 |
Q |
| |
|
||||||| |||| | || | || || | ||||||| | ||||||||||| ||||| ||| |||||| || ||||||||||||||||| || |||||||| |
|
|
| T |
21715545 |
taaccactcgtaatcagcaagtatgcactttaatggactgtcaaaagaatattcacctggcgctcttatctaaagatgaatcctggactttgttccaaaa |
21715446 |
T |
|
| Q |
338 |
gcttgcagtaattgatgacgaattctctgtgtcattagatggtgtaccacaagaaatctgctatgaatgcaagggacttcccttagcaatcaaaactatg |
437 |
Q |
| |
|
|| |||| ||| |||| | || || |||| | |||||||| |||| |||| ||||| || |||| |||||||| ||| |||| || ||||||| |
|
|
| T |
21715445 |
gcatgcaaagattactgacaagttttccaagtcaatggatggtgtgccacgagaactctgcgataaatgtaagggactgcccctagctattgtaactatg |
21715346 |
T |
|
| Q |
438 |
tcttcttccttaaaaggaaaggataatactgagtgg |
473 |
Q |
| |
|
| |||| ||||||||||||| |||| | ||||||| |
|
|
| T |
21715345 |
gcgtcttgcttaaaaggaaagcataaaagtgagtgg |
21715310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 771 - 864
Target Start/End: Original strand, 21704516 - 21704609
Alignment:
| Q |
771 |
gtgaagatgcatgacatggttcgcgacacagccttatggatcgcaaatagatcaaataattgtaaaatcttggtaaatgttgacaaaccactca |
864 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||| ||||| || ||| | || | ||||| |||||||||||||||||||| |||| |
|
|
| T |
21704516 |
gtgaagatgcatgacttggttcgcgaagtggccttatggatagcaaagaggtcagaggatcgcaaaattttggtaaatgttgacaaacctctca |
21704609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 231 - 344
Target Start/End: Original strand, 21622463 - 21622576
Alignment:
| Q |
231 |
atccttgtaaccacacgtattgagaatgtttgtaatttaatgaattgtcaaaagaagattcatttggggctcttgtccaaagatgaatcctggacattct |
330 |
Q |
| |
|
|||||||||||||| |||| | || | || || | || |||| | ||||||||||| |||||| | | ||| || || ||||||||||||||||| || | |
|
|
| T |
21622463 |
atccttgtaaccactcgtaatcagcaagtatgcacttcaatggactgtcaaaagaatattcatctagagcttttatctaaagatgaatcctggactttgt |
21622562 |
T |
|
| Q |
331 |
tccaaaagcttgca |
344 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
21622563 |
tccaaaagcatgca |
21622576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 231 - 344
Target Start/End: Original strand, 21644177 - 21644290
Alignment:
| Q |
231 |
atccttgtaaccacacgtattgagaatgtttgtaatttaatgaattgtcaaaagaagattcatttggggctcttgtccaaagatgaatcctggacattct |
330 |
Q |
| |
|
|||||||||||||| |||| | || | || || | || |||| | ||||||||||| |||||| | | ||| || || ||||||||||||||||| || | |
|
|
| T |
21644177 |
atccttgtaaccactcgtaatcagcaagtatgcacttcaatggactgtcaaaagaatattcatctagagcttttatctaaagatgaatcctggactttgt |
21644276 |
T |
|
| Q |
331 |
tccaaaagcttgca |
344 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
21644277 |
tccaaaagcatgca |
21644290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 7e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 39 - 293
Target Start/End: Complemental strand, 23010646 - 23010392
Alignment:
| Q |
39 |
attcaaggacaaattgcagatatgttaaactttaaattgggggaagaaagtgaagatggaagagcacaacgtctatggttgcgtttaaaagaaataaaga |
138 |
Q |
| |
|
||||||||| |||| || ||| | || ||| | ||||||| |||||||||||| || ||||||||||||||| | |||||| |||| ||||||| ||| |
|
|
| T |
23010646 |
attcaaggaaaaatagctgatgttttgaacatgaaattggaggaagaaagtgatgagggaagagcacaacgtttgtggttgagtttgaaagaaaagaagc |
23010547 |
T |
|
| Q |
139 |
gaactcttataatagttgacaatctatggagagagtttcatttgaaggatacagggattcgcttaaacaatgataatagaggtgcattgaaaatccttgt |
238 |
Q |
| |
|
| | ||| ||||||| || || |||||||||||||| ||||||| ||| ||||||||||||| |||||||||| | ||||||| ||| ||||||| |
|
|
| T |
23010546 |
ggattctcgtaatagtagatgatttatggagagagtttgatttgaacgatgtagggattcgcttagacaatgataacaagggtgcatggaagatccttgc |
23010447 |
T |
|
| Q |
239 |
aaccacacgtattgagaatgtttgtaatttaatgaattgtcaaaagaagattcat |
293 |
Q |
| |
|
|||||| |||| | | |||| ||| || | ||| | |||||||||||||||||| |
|
|
| T |
23010446 |
aaccactcgtaatcaacatgtatgtgatctgatgcactgtcaaaagaagattcat |
23010392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 770 - 918
Target Start/End: Complemental strand, 23009903 - 23009755
Alignment:
| Q |
770 |
cgtgaagatgcatgacatggttcgcgacacagccttatggatcgcaaatagatcaaataattgtaaaatcttggtaaatgttgacaaaccactcagcatt |
869 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||| ||||| |||||| | ||| ||||| |||||||||||||||||||| | |||| | |
|
|
| T |
23009903 |
cgtgaagatgcatgacacagttcgtgacacagccttatggattgcaaagagatcagacaataacaaaattgtggtaaatgttgacaaaccaattagcact |
23009804 |
T |
|
| Q |
870 |
gtggcagaagataaaaatataagagattgttttgcagtatcttcatggt |
918 |
Q |
| |
|
||| | ||| | | |||||||||||||||||| |||| ||||||| |
|
|
| T |
23009803 |
ttggaaatggatgatagtataagagattgttttgctctatcctcatggt |
23009755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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