View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20326_low_10 (Length: 365)
Name: NF20326_low_10
Description: NF20326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20326_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 16 - 351
Target Start/End: Original strand, 7961946 - 7962281
Alignment:
| Q |
16 |
ctttttagcagcgtggagcttgtaaaagtcaccatcatctggatattctttcaatttaatcatttcatctatattctcattctcaggtataaagttttcc |
115 |
Q |
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| T |
7961946 |
ctttttagcagcgtggagcttgtaaaagtcaccatcatctggatattctttcaatttaatcattccatctatattctcattctcaggtattaagttttcc |
7962045 |
T |
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| Q |
116 |
aagtccaccccaattgaactagttaaggtaagattttccgcaacaataacttatgcgcccattgctagatcagaccacgaagctataactggttttttgg |
215 |
Q |
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| T |
7962046 |
aagtccaccccaattgaaccagttaaggtaagattttccgcaacaataacttatgcgcccattgccagatcggaccacgaagcaataactggttttttgg |
7962145 |
T |
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| Q |
216 |
cagcaagagacctgatttctgtccacaatgaagaataatacaaaacatcgccccccaaactgtcgattcggataataacagccttgaattttgttgagtc |
315 |
Q |
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| T |
7962146 |
cagcaagagacctgatttctgtccacaatgaagaataatacaaaacatcgccccccaaactgtcgattcggatattaacagccttgaattttgttgagtc |
7962245 |
T |
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| Q |
316 |
accgacttcacggatcttgtcaatgaactcttgtcc |
351 |
Q |
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| T |
7962246 |
accgacttcacggatcttgtcaatgaactcttgtcc |
7962281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 169 - 351
Target Start/End: Original strand, 7972481 - 7972663
Alignment:
| Q |
169 |
tgcgcccattgctagatcagaccacgaagctataactggttttttggcagcaagagacctgatttctgtccacaatgaagaataatacaaaacatcgccc |
268 |
Q |
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| T |
7972481 |
tgcgctcattgccagatcagacatcaaagcaataactggttttttggaagcaagagacctgatttttgtccacattaaagaataaaacaaaatatcgccc |
7972580 |
T |
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| Q |
269 |
cccaaactgtcgattcggataataacagccttgaattttgttgagtcaccgacttcacggatcttgtcaatgaactcttgtcc |
351 |
Q |
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| T |
7972581 |
cccaaactatcaattcggataataacagccttgaatttttttgactcaccggcttcacggatcttgttaatgaaatcttgtcc |
7972663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 19 - 180
Target Start/End: Original strand, 7972307 - 7972468
Alignment:
| Q |
19 |
tttagcagcgtggagcttgtaaaagtcaccatcatctggatattctttcaatttaatcatttcatctatattctcattctcaggtataaagttttccaag |
118 |
Q |
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| T |
7972307 |
tttagcagcgtggagcttgtgatatctaccatcatctggatattcttccaaatcaatcttttcattaatattctcattctcaggtataaattttcccaag |
7972406 |
T |
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| Q |
119 |
tccaccccaattgaactagttaaggtaagattttccgcaacaataacttatgcgcccattgc |
180 |
Q |
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| T |
7972407 |
tccactccaattgaaccagttaaggtaaggttttctgcaacaataactcctgcgcccattgc |
7972468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 267 - 349
Target Start/End: Complemental strand, 47293125 - 47293043
Alignment:
| Q |
267 |
cccccaaactgtcgattcggataataacagccttgaattttgttgagtcaccgacttcacggatcttgtcaatgaactcttgt |
349 |
Q |
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| T |
47293125 |
cccccgaactgtcaattcggataataacagccttgcaattttttgactcactgacttcacggattttgttaatgaactcttgt |
47293043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 105 - 180
Target Start/End: Complemental strand, 47293311 - 47293236
Alignment:
| Q |
105 |
taaagttttccaagtccaccccaattgaactagttaaggtaagattttccgcaacaataacttatgcgcccattgc |
180 |
Q |
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| T |
47293311 |
taaagattcccaggtccactccaattgaaccagttaaggtaagattttctgcaacaataactcctgcgcccattgc |
47293236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 56208880 - 56208924
Alignment:
| Q |
136 |
agttaaggtaagattttccgcaacaataacttatgcgcccattgc |
180 |
Q |
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| T |
56208880 |
agttaaggtaagattttctgcaacaataactcctgctcccattgc |
56208924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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