View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20326_low_15 (Length: 300)

Name: NF20326_low_15
Description: NF20326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20326_low_15
NF20326_low_15
[»] chr1 (3 HSPs)
chr1 (19-221)||(41525731-41525939)
chr1 (113-213)||(36933911-36934005)
chr1 (19-49)||(36933731-36933761)
[»] chr8 (1 HSPs)
chr8 (221-281)||(45349104-45349164)


Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 41525731 - 41525939
Alignment:
Q  19 gtaaatcaatactatagtaacttattctgtacgagccgtattgtattcattatgcctttaggttagaaaaattagatgacactattgtatacatt----- 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  41525731 gtaaatcaatactatagtaacttattctgtacgagccgtattgtattcattatgcctttaggttagaaaaattagatgacactattgtatacattaatca 41525830  T
Q  114 -gaactgaattattaatgctgtgtagatctcttgtgttaagtgccattgaaaccagtatcattatttgttattaacaggcatatctatctctaccagagg 212  Q
     |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||    
T  41525831 tgaactgaattattaatgccgtgtagatctcttgtgttaagtgccattgaaaccagtatcattatttgttattaacatgcatatctatctctaccacagg 41525930  T
Q  213 ggacagcgc 221  Q
    |||||||||    
T  41525931 ggacagcgc 41525939  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 113 - 213
Target Start/End: Original strand, 36933911 - 36934005
Alignment:
Q  113 tgaactgaattattaatgctgtgtagatctcttgtgttaagtgccattgaaaccagtatcattatttgttattaacaggcatatctatctctaccagagg 212  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||||      || ||||||| ||||||||||||||||||||||||||||||    
T  36933911 tgaactggattattaatgctgtgtagatctcttgcgttaagtgccattgaaac------cactatttgtgattaacaggcatatctatctctaccagagg 36934004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 49
Target Start/End: Original strand, 36933731 - 36933761
Alignment:
Q  19 gtaaatcaatactatagtaacttattctgta 49  Q
    |||||||||||||||||||||||||||||||    
T  36933731 gtaaatcaatactatagtaacttattctgta 36933761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 45349104 - 45349164
Alignment:
Q  221 cactactacatttataacttttactaacatttaactagtaatatccttaaaagttttacta 281  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||    
T  45349104 cactactacatttataacctttactaacatttaactagtaatatccataaaagtgttacta 45349164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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