View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20326_low_4 (Length: 631)

Name: NF20326_low_4
Description: NF20326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20326_low_4
NF20326_low_4
[»] chr3 (2 HSPs)
chr3 (20-622)||(36743651-36744258)
chr3 (353-385)||(35722340-35722372)
[»] chr8 (12 HSPs)
chr8 (291-390)||(6392095-6392194)
chr8 (255-390)||(6364472-6364607)
chr8 (255-390)||(7460671-7460806)
chr8 (255-387)||(6290510-6290642)
chr8 (255-390)||(6353599-6353734)
chr8 (304-390)||(6411259-6411345)
chr8 (314-390)||(6264930-6265006)
chr8 (314-390)||(6425289-6425365)
chr8 (314-390)||(6275755-6275831)
chr8 (275-390)||(6333183-6333298)
chr8 (275-390)||(6371303-6371418)
chr8 (362-400)||(6458252-6458290)
[»] chr2 (1 HSPs)
chr2 (316-396)||(42694385-42694465)
[»] chr1 (1 HSPs)
chr1 (377-499)||(36923579-36923701)


Alignment Details
Target: chr3 (Bit Score: 547; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 20 - 622
Target Start/End: Original strand, 36743651 - 36744258
Alignment:
Q  20 gattccattacatttctttgcaactcatgggtttacaatgctaaacaatatcgcaaggaccgaattttctttgccaataaggtaccaaacaactttaact 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36743651 gattccattacatttctttgcaactcatgggtttacaatgctaaacaatatcgcaaggaccgaattttctttgccaataaggtaccaaacaactttaact 36743750  T
Q  120 ttactatttttaacttcggtatcaaaataacttttaagctcnnnnnnngttgggccaaacacaccctatgtttagttaatatgtgtcgcgatgattgaaa 219  Q
    ||| |||||||||||||||||||||||||||||||||||||       || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36743751 ttattatttttaacttcggtatcaaaataacttttaagctcaaaaaaagtcgggccaaacacaccctatgtttagttaatatgtgtcgcgatgattgaaa 36743850  T
Q  220 gaatagtcatgttatgtaattatttatgttgcagccataccttccacatgaaatgccagctccactagttaactacagacatgtagaattggatacttta 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36743851 gaatagtcatgttatgtaattatttatgttgcagccataccttccacatgaaatgccagctccactagttaactacagacatgtagaattggatacttta 36743950  T
Q  320 aggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttgggaaatccagataagagtcgagaccttgctc 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36743951 aggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttgggaaatccagataagagtcgagaccttgctc 36744050  T
Q  420 gtccgattctcggaggttcttctaaatttccctatcctcgcaggggaagaacctgcagaaaaccgaccaaaacaggttagttagttagttagttaatctc 519  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36744051 gtccgattctcggaggttcttctaaatttccctatcctcgtaggggaagaacctgcagaaaaccgaccaaaacaggttagttagttagttagttaatctc 36744150  T
Q  520 tacgttaattgctctcaact-----ttttcttagtaatatataattgaaactttttactaatgaatatatattatttatatgatgattcattaattcaca 614  Q
    ||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  36744151 tacgttaattgctctcaactttttcttttcttagtaatatataattgaaactttttactaatgaatatatattatttatatgatgattcattaatttaca 36744250  T
Q  615 ggttctgc 622  Q
    | ||||||    
T  36744251 gattctgc 36744258  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 353 - 385
Target Start/End: Original strand, 35722340 - 35722372
Alignment:
Q  353 gacagaatctatgattatgatgtttacaatgat 385  Q
    ||||||||||||||||||||||| |||||||||    
T  35722340 gacagaatctatgattatgatgtctacaatgat 35722372  T

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Target: chr8 (Bit Score: 60; Significance: 3e-25; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 291 - 390
Target Start/End: Complemental strand, 6392194 - 6392095
Alignment:
Q  291 actacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 390  Q
    |||||||||| | ||||||| |||||||||| ||||||||||| | | ||||| |||||||||||||||| |||||||||||||| ||||||||||||||    
T  6392194 actacagacaagaagaattgaatactttaagaggagatggaactggagagcgtaaggaatgggacagaatatatgattatgatgtctacaatgatttggg 6392095  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 255 - 390
Target Start/End: Complemental strand, 6364607 - 6364472
Alignment:
Q  255 cataccttccacatgaaatgccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatggga 354  Q
    |||||||||||  |||||  ||||||||  ||||  |||||||||| | ||||||| | |||||||| ||||||||||| | | ||||| ||||||||||    
T  6364607 cataccttccaagtgaaacaccagctcctttagtctactacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatggga 6364508  T
Q  355 cagaatctatgattatgatgtttacaatgatttggg 390  Q
     ||||| |||||||||||||| ||||||||||||||    
T  6364507 aagaatatatgattatgatgtctacaatgatttggg 6364472  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 255 - 390
Target Start/End: Complemental strand, 7460806 - 7460671
Alignment:
Q  255 cataccttccacatgaaatgccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatggga 354  Q
    |||||||||||  || ||  ||||||||| ||||  |||||||||| | ||||||| | |||||||| ||||||||||| | | ||||  ||||||||||    
T  7460806 cataccttccaagtgcaacaccagctccattagtgtactacagacaagaagaattgaagactttaagaggagatggaacgggagagcgcaaggaatggga 7460707  T
Q  355 cagaatctatgattatgatgtttacaatgatttggg 390  Q
    |||||| |||||||||||||| |||||||| |||||    
T  7460706 cagaatatatgattatgatgtctacaatgacttggg 7460671  T

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Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 255 - 387
Target Start/End: Complemental strand, 6290642 - 6290510
Alignment:
Q  255 cataccttccacatgaaatgccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatggga 354  Q
    |||||||||||  |||||  ||||||||| ||||  |||| ||||| | ||||||| | |||||||| ||||||||||||| | ||||  ||||||||||    
T  6290642 cataccttccaagtgaaacaccagctccattagtgtactatagacaagaagaattgaagactttaagaggagatggaacaggagagcgcaaggaatggga 6290543  T
Q  355 cagaatctatgattatgatgtttacaatgattt 387  Q
     ||||| |||||||| ||||| |||||||||||    
T  6290542 aagaatatatgattacgatgtctacaatgattt 6290510  T

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Target: chr8; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 255 - 390
Target Start/End: Complemental strand, 6353734 - 6353599
Alignment:
Q  255 cataccttccacatgaaatgccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatggga 354  Q
    |||||||||||  |||||  || |||||| ||||  |||||||||| | ||||||| | |||||||| ||||||||||| | | ||||  ||||||||||    
T  6353734 cataccttccaagtgaaacaccggctccattagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaaggaatggga 6353635  T
Q  355 cagaatctatgattatgatgtttacaatgatttggg 390  Q
     ||||| |||||||| ||||| ||||||||||||||    
T  6353634 aagaatatatgattacgatgtctacaatgatttggg 6353599  T

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Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 304 - 390
Target Start/End: Complemental strand, 6411345 - 6411259
Alignment:
Q  304 agaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 390  Q
    ||||||| | |||||||| ||||||||||| | | ||||| ||| |||||||||||| |||||||||||||| ||||||||||||||    
T  6411345 agaattgaagactttaagaggagatggaactggagagcgtaaggtatgggacagaatatatgattatgatgtctacaatgatttggg 6411259  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 390
Target Start/End: Complemental strand, 6265006 - 6264930
Alignment:
Q  314 actttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 390  Q
    |||||||| ||||||||||| |   ||||  | |||||||||||| | |||||||||||||||||||||||||||||    
T  6265006 actttaagaggagatggaacgggggagcgcaaagaatgggacagagtttatgattatgatgtttacaatgatttggg 6264930  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 390
Target Start/End: Complemental strand, 6425365 - 6425289
Alignment:
Q  314 actttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 390  Q
    |||||||| |||||||||| || | ||||  |||||||||| || ||||||||||| ||||| ||||||||||||||    
T  6425365 actttaagaggagatggaaaaggagagcgcaaggaatgggaaaggatctatgattacgatgtctacaatgatttggg 6425289  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 314 - 390
Target Start/End: Complemental strand, 6275831 - 6275755
Alignment:
Q  314 actttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 390  Q
    |||||||| ||||||||||||| | ||||| | |||||||| || |||||||| || ||||| ||||||||| ||||    
T  6275831 actttaagaggagatggaacaggagagcgtaaagaatgggaaaggatctatgactacgatgtctacaatgatgtggg 6275755  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 390
Target Start/End: Complemental strand, 6333298 - 6333183
Alignment:
Q  275 ccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatg 374  Q
    ||||||||| ||||  |||||||||| | ||||||| | |||||||| ||||||||||| |   ||||  | |||| ||| || |||||||| || ||||    
T  6333298 ccagctccattagtctactacagacaagaagaattgaagactttaagaggagatggaacgggtgagcgcaaagaatcggataggatctatgactacgatg 6333199  T
Q  375 tttacaatgatttggg 390  Q
    |||||||||| |||||    
T  6333198 tttacaatgacttggg 6333183  T

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Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 390
Target Start/End: Complemental strand, 6371418 - 6371303
Alignment:
Q  275 ccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatg 374  Q
    ||||||||| ||||  |||||||||| | ||| ||| | |||||||| ||||||||||| |   ||||  | |||||||| || |||||||| || ||||    
T  6371418 ccagctccattagtctactacagacaagaagagttgaagactttaagaggagatggaacgggtgagcgcaaagaatgggataggatctatgactacgatg 6371319  T
Q  375 tttacaatgatttggg 390  Q
    | ||||||||||||||    
T  6371318 tctacaatgatttggg 6371303  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 362 - 400
Target Start/End: Complemental strand, 6458290 - 6458252
Alignment:
Q  362 tatgattatgatgtttacaatgatttgggaaatccagat 400  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  6458290 tatgattatgatatttataatgatttgggaaatccagat 6458252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 316 - 396
Target Start/End: Complemental strand, 42694465 - 42694385
Alignment:
Q  316 tttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttgggaaatcc 396  Q
    |||||| ||||||||||||| | | ||  | |||||||| |||||||||||||||||||| ||||||||||| ||||||||    
T  42694465 tttaagaggagatggaacaggagaacgcaaagaatgggaaagaatctatgattatgatgtctacaatgatttaggaaatcc 42694385  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 499
Target Start/End: Original strand, 36923579 - 36923701
Alignment:
Q  377 tacaatgatttgggaaatccagataagagtcgagaccttgctcgtccgattctcggaggttcttctaaatttccctatcctcgcaggggaagaacctgca 476  Q
    |||||||||||||||||||| |||||  |||  || | | ||||||| ||||| ||||| ||| || ||| ||| || |||||||||||||||||  |||    
T  36923579 tacaatgatttgggaaatcctgataaaggtcttgaacattctcgtcctattcttggagggtctgctgaatatccttaccctcgcaggggaagaactggca 36923678  T
Q  477 gaaaaccgaccaaaacaggttag 499  Q
    || ||||  ||||| ||||||||    
T  36923679 gagaacctgccaaatcaggttag 36923701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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