View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20326_low_5 (Length: 556)
Name: NF20326_low_5
Description: NF20326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20326_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 497; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 19 - 538
Target Start/End: Complemental strand, 42799240 - 42798723
Alignment:
| Q |
19 |
agagaacactaaatattggccatacattaaatgatatgaattggttcatcaaaataaaatcataaacatgatcacacataattatattagctgcttaaaa |
118 |
Q |
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| T |
42799240 |
agagaacactaaatattggccatacattaaatgatatgaattggttcatcaaaataaaatcataaacatgatcacacataattatattagctgcttaaaa |
42799141 |
T |
|
| Q |
119 |
tagttgtgattcattagaattatgtttgctttcatatttgcgaagtgcatgaccaatgattgtgctaaaatgtttgtacagtgcacaattttttcaatac |
218 |
Q |
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| T |
42799140 |
tagttgtgattcattagaattatgtttgctttcatatttgcgaagtgcatgaccaatgattgtgctaaaatgtttgtacagtgcacaattttttcaatac |
42799041 |
T |
|
| Q |
219 |
agaaagggtctaagtccaaacaaaaagagaaattgcaccgaaactaatagaggagtagaaactcgtctactatcagaattgagcaactggaccaactgag |
318 |
Q |
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| T |
42799040 |
agaaagggtctaagtccaaacaaaaagagaaattgcaccgaaactaatagaggagaagaaactcgtctactatcagaattgagcaactggaccaactgag |
42798941 |
T |
|
| Q |
319 |
tcagacacaactcataaacagtcaaagcatcattatattctttgcttcatgatatgagtggcatatcttcacctcccagtccatttctacaagtctttga |
418 |
Q |
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| T |
42798940 |
tcagacacaactc--aaacaatcaaagcatcattatattctttgcttcatgatacgagtggcatatcttcacctcccagtccatttctacaagtctttga |
42798843 |
T |
|
| Q |
419 |
atacactcgataagactcctttccaacaatgttcatacattactctgcgtaacataattaacaacagtctctctcacaatccacacataactccactgct |
518 |
Q |
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| T |
42798842 |
atacactcgataagactcctttccaacaatgttcatacattactctgcgtaacataattaacaacagtctctctcacaatccacacataactccactgct |
42798743 |
T |
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| Q |
519 |
ttaaaacctgtactctttgc |
538 |
Q |
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|||||||||||||||||||| |
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| T |
42798742 |
ttaaaacctgtactctttgc |
42798723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 97 - 350
Target Start/End: Complemental strand, 28762780 - 28762528
Alignment:
| Q |
97 |
taattatattagctgcttaaaatagttgtgattcattagaattatgtttgctttcatatttgcgaagtgcatgaccaatgattgtgctaaaatgtttgta |
196 |
Q |
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|||||| || |||||||||| ||||||||||||||||||||||||||||| |||||| || |||||| |||||||||||||||||||||||||||||| |
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| T |
28762780 |
taattagatgagctgcttaagatagttgtgattcattagaattatgtttgttttcatccttatgaagtgaatgaccaatgattgtgctaaaatgtttgta |
28762681 |
T |
|
| Q |
197 |
cagtgcacaattttttcaatacagaa-agggtctaagtccaaacaaaaagagaaattgcaccgaaactaatagaggagtagaaactcgtctactatcaga |
295 |
Q |
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| T |
28762680 |
cagttcatggtgttttgggtacaaaagagggtctaagtccaaacaaaaagagaaattacatcgaatctaatagaggagtaggaactcgacgaatatcaga |
28762581 |
T |
|
| Q |
296 |
attgagcaactggaccaactgagtcagacacaactcataaacagtcaaagcatca |
350 |
Q |
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|||||| ||||||||||| |||||| |||||||||| ||||||||||||||||| |
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| T |
28762580 |
attgagaaactggaccaattgagtcggacacaactc--aaacagtcaaagcatca |
28762528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 193
Target Start/End: Original strand, 19376488 - 19376569
Alignment:
| Q |
112 |
cttaaaatagttgtgattcattagaattatgtttgctttcat--atttgcgaagtgcatgaccaatgattgtgctaaaatgttt |
193 |
Q |
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||||| || |||||| || ||| |||||||||||| |||||| || ||||| |||||||||||||||||||||| ||||||| |
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| T |
19376488 |
cttaacattgttgtgctttattggaattatgtttggtttcatcaatgtgcga--tgcatgaccaatgattgtgctataatgttt |
19376569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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