View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20326_low_6 (Length: 527)
Name: NF20326_low_6
Description: NF20326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20326_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 465; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 17 - 513
Target Start/End: Original strand, 3093247 - 3093743
Alignment:
| Q |
17 |
aggtttccctcatttctgttgttggcattaccagctttggcagctatattgaagccgctagcggcgcaacattcaccggttctcaaagagacttcggaat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3093247 |
aggtttccctcatttctgttgttggcattaccagctttggcagctatattgaagccgctagcggcgcaacattcaccggttctcaaagagacttcggaat |
3093346 |
T |
|
| Q |
117 |
gttttctcccgaggtacattttaaaatttgtgttcgatttaaatcaattcttacaaactagtgtgatatgtctttgacctatgacttactttttaaagac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3093347 |
gttttctcccgaggtacattttaaaatttgtgttcgatctaaatcaattcttacaaactagtgcgatatgtctttgacctatgacttactttttaaagac |
3093446 |
T |
|
| Q |
217 |
atgttacatctaatctaatgtgatactttcgaaaccacatggaatttcatctggttaagtttcatccacgtcaatttattatttagaagttaacatcaaa |
316 |
Q |
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||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3093447 |
atgttacatctaatctaatgtgagactttcaaaaccacatggaatttcatccggttaagtttcatccacgtcaatttattatttagaagttaacatcaaa |
3093546 |
T |
|
| Q |
317 |
accaaataaacaatatggtatggcatggcatgacctagctaacaaatagcaaatattacaaaaatatttttcaaacccgactcccctgcaattaaggaat |
416 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3093547 |
accaaataaacaatatggtatggtatggcatgacctagctaacaaatagcaaatattacaaaaatatttttcaaacccgactcccctgcaattaaggaat |
3093646 |
T |
|
| Q |
417 |
ccatgcattcatgcagtcggacggtagtcgtttgatcaaaactgaacaagtcatattcaatcgcgatattttctattggtaaaataaaaatctgtat |
513 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3093647 |
ccatgcattcatgcagtcggacggtagtcgtttgatcaaaattgaacaagtcatattcaatcgcgatattttctatcggtaaaataaaaatctgtat |
3093743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 3084367 - 3084574
Alignment:
| Q |
17 |
aggtttccctcatttctgttgttggcattaccagctttggcagctatattgaagccgctagcggcgcaacattcaccggttctcaaagagacttcggaat |
116 |
Q |
| |
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|||| ||||||||||| |||||||||||||||| ||| |||||||| |||||||||| ||||| ||| | |||||| || | ||| || ||| ||| |
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| T |
3084367 |
aggtctccctcatttcagttgttggcattaccaacttcggcagctacattgaagccgtgagcggtgcagccttcaccagtaatggaagcgagttcacaat |
3084466 |
T |
|
| Q |
117 |
gttttctcccgaggtacattttaaaatttgtgttcgatttaaatcaattcttacaaactagtgtgatatgtctttgacctatgacttactttttaaagac |
216 |
Q |
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|||| ||||| |||||||||| | ||||||||||| || |||||||||||||||||||||||| |||||||||| ||| ||| | |||||||| ||||| |
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| T |
3084467 |
gtttactcccaaggtacatttaacaatttgtgttccatctaaatcaattcttacaaactagtgcgatatgtcttcgacttatta-atactttttcaagac |
3084565 |
T |
|
| Q |
217 |
atgttacat |
225 |
Q |
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||| ||||| |
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| T |
3084566 |
atggtacat |
3084574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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