View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20326_low_8 (Length: 394)
Name: NF20326_low_8
Description: NF20326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20326_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 6820135 - 6819742
Alignment:
| Q |
1 |
atatgagaaaacccctgaagttttggaggcaaagatcacaaaagcagaagacacagtgtta--------------tgtgagccaaacatgctttgtgaca |
86 |
Q |
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| T |
6820135 |
atatgagaaaacccctgaagtattggaggcaaagatcacagaagcagaagacacagtgttacacattgctgtgtatgtgagccaaacatgctttgtgaca |
6820036 |
T |
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| Q |
87 |
gccttgttagataacatatgccaagacgtgtgcaagaacatcctaagaacacaaaactcgaagggaaataccccccttcacgttgctgcagagcttggga |
186 |
Q |
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| T |
6820035 |
gccttgttagataacatatgccaagacgtgtgcatgaacatcctaagaacgcaaaactcgaagggaaataccccccttcatgttgctgcagagcttggga |
6819936 |
T |
|
| Q |
187 |
atgtagaaatttgcaacaacatagctaaaagatgtcctatcctcatttcgtatcgaaatttcgaaggcgaaactcctcttttcttggcagctgttcatgg |
286 |
Q |
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| T |
6819935 |
atgtagacatttgcaacaacatagctaaaagatgtcctatcctcatttcgtatcgaaatttcgaaggcgaaactcctcttttcttggcagctgttcatgg |
6819836 |
T |
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| Q |
287 |
aaaaagagatgctttcttttgtcttcatggtcaccaacagaacaaagatgatgactcactttcaatcaaaaacaatggagacactattcttcat |
380 |
Q |
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| T |
6819835 |
aaaaagagatgctttcttttgtcttcatggtcaccaacagaacaaagatgatgactcactttcaatcaaaaacaatggagacactattcttcat |
6819742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 6834611 - 6834218
Alignment:
| Q |
1 |
atatgagaaaacccctgaagttttggaggcaaagatcacaaaagcagaagacacagtgttat--------------gtgagccaaacatgctttgtgaca |
86 |
Q |
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| T |
6834611 |
atatgagcaaaaccctgaagtattggaggcaaagatcacaaaagcagaagacacggtgttacacattgccatatacgtgagccaaacaatttttgtgaca |
6834512 |
T |
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| Q |
87 |
gccttgttagataacatatgccaagacgtgtgcaagaacatcctaagaacacaaaactcgaagggaaataccccccttcacgttgctgcagagcttggga |
186 |
Q |
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| T |
6834511 |
accttgttagataacataagccaagatatgtgccggaacatcctaagaatgcaaaactcaaagggaaatactcctcttcatgttgcagcagagcttggga |
6834412 |
T |
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| Q |
187 |
atgtagaaatttgcaacaacatagctaaaagatgtcctatcctcatttcgtatcgaaatttcgaaggcgaaactcctcttttcttggcagctgttcatgg |
286 |
Q |
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| T |
6834411 |
atgtagaaatttgcaacaatatagccagaagagatcccatcctcatttcatatcgaaattttgaaggcgagactcctcttttcttggcagctgttcatgg |
6834312 |
T |
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| Q |
287 |
aaaaagagatgctttcttttgtcttcatggtcaccaacagaacaaagatgatgactcactttcaatcaaaaacaatggagacactattcttcat |
380 |
Q |
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| T |
6834311 |
aaaaagagatgctttcttttgtcttcatggtcacgaacagaacaaagatgatgactcactttcaatcaaaaacaatggagacactattcttcat |
6834218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 77 - 380
Target Start/End: Complemental strand, 6813489 - 6813186
Alignment:
| Q |
77 |
ctttgtgacagccttgttagataacatatgccaagacgtgtgcaagaacatcctaagaacacaaaactcgaagggaaataccccccttcacgttgctgca |
176 |
Q |
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|||||||||| ||||||||||||| || || ||||| |||| | |||||||| ||| |||||||| ||||||||||| || ||||| ||||| ||| |
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| T |
6813489 |
ctttgtgacaaccttgttagataaaatcagcaaagacatgtgttgggacatcctacgaatgcaaaactcaaagggaaatactcctcttcatgttgcagca |
6813390 |
T |
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| Q |
177 |
gagcttgggaatgtagaaatttgcaacaacatagctaaaagatgtcctatcctcatttcgtatcgaaatttcgaaggcgaaactcctcttttcttggcag |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
6813389 |
gagcttgggaatgtagaaatttgcaacaacatagctaaaagagatcctatcctcatttcctgtcgaaatttcgaaggcgaaactcctcttttcttggcag |
6813290 |
T |
|
| Q |
277 |
ctgttcatggaaaaagagatgctttcttttgtcttcatggtcaccaacagaacaaagatgatgactcactttcaatcaaaaacaatggagacactattct |
376 |
Q |
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|||| |||| |||||||| || ||||||||||||||| ||| || ||| ||||||||||| | ||| |||||| ||||| ||||| ||||||||||| |
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| T |
6813289 |
ctgtatatggcaaaagagaggcattcttttgtcttcatagtcgtcatcaggacaaagatgattattcagtttcaagaaaaaataatggggacactattct |
6813190 |
T |
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| Q |
377 |
tcat |
380 |
Q |
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|||| |
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| T |
6813189 |
tcat |
6813186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 304 - 380
Target Start/End: Complemental strand, 34778905 - 34778827
Alignment:
| Q |
304 |
tttgtcttcatggtcaccaacagaacaaagatgatgactcactttcaat--caaaaacaatggagacactattcttcat |
380 |
Q |
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| T |
34778905 |
tttgtcttcatggtcaccaacagaataaagatgatgattcactttcaataaaaaaaacaatggagacaccattcttcat |
34778827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 6813579 - 6813519
Alignment:
| Q |
1 |
atatgagaaaacccctgaagttttggaggcaaagatcacaaaagcagaagacacagtgtta |
61 |
Q |
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|||||| |||| |||| |||| |||||||| ||||||||||||| |||||||||| ||||| |
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| T |
6813579 |
atatgaaaaaaaccctaaagtattggaggccaagatcacaaaagtagaagacacattgtta |
6813519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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