View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20326_low_9 (Length: 384)
Name: NF20326_low_9
Description: NF20326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20326_low_9 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 18 - 384
Target Start/End: Complemental strand, 8285165 - 8284799
Alignment:
| Q |
18 |
aagatcaactgactcatcatcattgcttgatgttgtagcaacaccaaaattaagttgtgggtcttgctggtacatgtgaatcatattcattgcttcctct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8285165 |
aagatcaactgactcatcatcattgcttgatgttgtagcaacaccaaaattaagttgtgggtcttgctggtacatgtgaatcatattcattgcttcctct |
8285066 |
T |
|
| Q |
118 |
tgaatcttctcttgatcatatcggtgattcattgaggcaattccacttttacttccatagttcatggtgatctcatgattaactagaggtacatcaacat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8285065 |
tgaatcttctcttgatcatatcggtgattcattgaggcaattccacttttacttccatagttcatggtgatctcatgattaactagaggtacatcaacat |
8284966 |
T |
|
| Q |
218 |
tctgttgaggtaagggttgaaccattgaggagtttccattttcacttccatagttcatgaaaccagataagtgattaaacctatgtggtggtgtcatggc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8284965 |
tctgttgaggtaagggttgaaccattgaggagtttccattttcacttccatagttcatgaaaccagataagtgattaaacctatgtggtggtgtcatggc |
8284866 |
T |
|
| Q |
318 |
attaggcactacttcattaatatgattctccacagggaaagagaaaaatgggggtgtaggtagttgt |
384 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8284865 |
attaggcactacttcattaatatgattctgcacagggaaagagaaaaatgggggtgtaggtagttgt |
8284799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 33 - 133
Target Start/End: Complemental strand, 34687250 - 34687150
Alignment:
| Q |
33 |
atcatcattgcttgatgttgtagcaacaccaaaattaagttgtgggtcttgctggtacatgtgaatcatattcattgcttcctcttgaatcttctcttga |
132 |
Q |
| |
|
||||||||| ||||| ||||| | ||||||||||||| |||||||||||| |||| |||||| ||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
34687250 |
atcatcattacttgaagttgtcgtgacaccaaaattaaattgtgggtcttgttggtgcatgtgcatcatattcatcgcttcctcttgaatattctcttga |
34687151 |
T |
|
| Q |
133 |
t |
133 |
Q |
| |
|
| |
|
|
| T |
34687150 |
t |
34687150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 33 - 230
Target Start/End: Complemental strand, 34695176 - 34694979
Alignment:
| Q |
33 |
atcatcattgcttgatgttgtagcaacaccaaaattaagttgtgggtcttgctggtacatgtgaatcatattcattgcttcctcttgaatcttctcttga |
132 |
Q |
| |
|
||||||||| ||||| | ||| | |||||||||||||||||||||||||| || | ||| || ||||||| || | ||||||||||| ||||||||| |
|
|
| T |
34695176 |
atcatcattacttgaagctgtcgtgacaccaaaattaagttgtgggtcttgttgatgcatatgcatcatatgaatcgactcctcttgaatattctcttga |
34695077 |
T |
|
| Q |
133 |
tcatatcggtgattcattgaggcaattccacttttacttccatagttcatggtgatctcatgattaactagaggtacatcaacattctgttgaggtaa |
230 |
Q |
| |
|
||| | ||| ||| |||||| |||||| |||| |||||||||||||| || | |||| ||||| |||||| | ||||||||| | ||||||||| |
|
|
| T |
34695076 |
tcaaaaaggtcattgattgagcagattccatttttgtttccatagttcatgatgttatcataattaagtagaggcagatcaacattttcttgaggtaa |
34694979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 309 - 384
Target Start/End: Complemental strand, 34687001 - 34686923
Alignment:
| Q |
309 |
tgtcatggcattaggcactac---ttcattaatatgattctccacagggaaagagaaaaatgggggtgtaggtagttgt |
384 |
Q |
| |
|
||||||| ||||| ||||||| |||||||||||||||||| || ||||||||| |||||||||||||||||||||| |
|
|
| T |
34687001 |
tgtcatgtcattaagcactaccctttcattaatatgattctcaaccgggaaagagggaaatgggggtgtaggtagttgt |
34686923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 34694959 - 34694849
Alignment:
| Q |
277 |
aaaccagataagtgattaaacctatgtggtggtgtcatggcattaggcactac---ttcattaatatgattctccacagggaaagagaaaaatgggggtg |
373 |
Q |
| |
|
|||||||| |||| |||||||| | ||| | | ||||| ||||| ||||||| || ||||||||||||||| || ||||||||| |||||||||||| |
|
|
| T |
34694959 |
aaaccagagaagtaattaaacccctctggcgttatcatgtcattaagcactacccttttattaatatgattctcaaccgggaaagaggaaaatgggggtg |
34694860 |
T |
|
| Q |
374 |
taggtagttgt |
384 |
Q |
| |
|
||||||||||| |
|
|
| T |
34694859 |
taggtagttgt |
34694849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University