View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20327_high_10 (Length: 459)
Name: NF20327_high_10
Description: NF20327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20327_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 13 - 444
Target Start/End: Complemental strand, 46356827 - 46356398
Alignment:
| Q |
13 |
aatattttcagctatgccgtgcaaatttcccaggttcatcctagatgtacaatgtccttttccctttctgttttatttcaatttaatataaattttcaac |
112 |
Q |
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| T |
46356827 |
aatattttcagccatgccgtgcaaatttcccaggttcatcctagatgtacaatgtccttttccctttctgttttatttcaatttaatataaattttcaac |
46356728 |
T |
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| Q |
113 |
tcattttagaactgttgtgtgctatgaaaataaaaaacggttggaaattcgttaatgttaattgcatagcttgaactgtatgttgacttcatcaacaatg |
212 |
Q |
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| T |
46356727 |
tcattttagaactgttgtgtgttatgaaaataaaaaacagttggaaattcgttaatgttaattgcatagcttgaactgtatgttgacttcatcaacaatg |
46356628 |
T |
|
| Q |
213 |
ctgagttcgagaaaagattgctttcacatatgcctctcatcagtcatcaccaaccgacattttggagctaatttgctgttagcattcataatcatcataa |
312 |
Q |
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| T |
46356627 |
ctgagttcgagaaaagattgctttcac--atgcctctcatcagtcatcaccaaccgacattttggagctaatttgctgttagcattcataatcatcataa |
46356530 |
T |
|
| Q |
313 |
acagttcattgtttatcttctgatgattgaacttcaaatactgcaggctatgatggtcagaggttttaaaggagatgttaacatacaaaagtgataatta |
412 |
Q |
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| T |
46356529 |
acagttcattgtttatcttctgatgattgaacttcaaatactgcaggctatgatggtcagaggttttaaaggagatgttaacatacaaaagtgataatta |
46356430 |
T |
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| Q |
413 |
gtgtcagaatcatcttttgggacgacatatat |
444 |
Q |
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| T |
46356429 |
gtgtcagaatcatcttttgggacgacatatat |
46356398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 9e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 268 - 384
Target Start/End: Complemental strand, 7177058 - 7176942
Alignment:
| Q |
268 |
gacattttggagctaatttgctgttagcattcataatcatcataaacagttcattgtttatcttctgatgattgaacttcaaatactgcaggctatgatg |
367 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| |||||| |||| ||||||||||||| ||| ||| ||||||||||||||||||| |
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| T |
7177058 |
gacattttggagctaatttgctgttggcattcataatcatcacaaacagctcatagtttatcttctgacaatttaacacaaaatactgcaggctatgata |
7176959 |
T |
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| Q |
368 |
gtcagaggttttaaagg |
384 |
Q |
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| T |
7176958 |
gccagaggttttaaagg |
7176942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 7177186 - 7177128
Alignment:
| Q |
168 |
tgttaattgcatagcttgaactgtatgttgacttcatcaacaatgctgagttcgagaaa |
226 |
Q |
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|||| ||||||||||| ||||| |||||||| |||||||| ||||||| |||| ||||| |
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| T |
7177186 |
tgttgattgcatagctggaactctatgttgatttcatcaataatgctgtgttctagaaa |
7177128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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