View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20327_high_15 (Length: 390)
Name: NF20327_high_15
Description: NF20327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20327_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 9 - 317
Target Start/End: Original strand, 44583404 - 44583709
Alignment:
| Q |
9 |
attcattacctgcttctcaccatcatcatcattaagcaagaaaagagagaagaatgtgtaattccacacaacacacgatcagcaacatcctaagaaaaac |
108 |
Q |
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||||||||||||||||||||| || |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
44583404 |
attcattacctgcttctcaccgtcgtcat---taagcaagaaaagagagaagaatgagtaattccacacaacacacgatcagcaaaatcctaagaaaaac |
44583500 |
T |
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| Q |
109 |
cccaaacaaaacactttcagtttcaacaagacaagcaaaacaactacacgcacacatcgtaaaaacaaaaggaacattgcactccgacaacatcctcgta |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44583501 |
cccaaacaaaacactttcagtttcaacaagacaagcaaaacaactacacgcacacatcgtaaaaacaaaaggaacattgcactccgacaacatcctcgta |
44583600 |
T |
|
| Q |
209 |
ctctcactctactcaaatctcaacctcttacaacattccctccacctcttcaactcccttccttctcctccaccacctctcgcatggtcttctataatca |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44583601 |
ctctcactctactcaaatctcaacctcttacaacattccctccacctcttcaactcccttccttctcctccaccacctctcgcatggtcttctataatca |
44583700 |
T |
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| Q |
309 |
aatgctaca |
317 |
Q |
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||||||||| |
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| T |
44583701 |
aatgctaca |
44583709 |
T |
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