View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20327_high_28 (Length: 250)
Name: NF20327_high_28
Description: NF20327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20327_high_28 |
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| [»] scaffold0070 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 25568581 - 25568815
Alignment:
| Q |
1 |
ctattgatgtttgaaaggattctactactacttgataagtgtttaatgccctcagaactgtaatcaacaattttacaacacaaaaataagtcaaattccc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25568581 |
ctattgatgtttgaaaggattctactactacttgataagtgtttaatgccctcagaactgtaatcaacaattttacaacacaaaaataagtcaaattccc |
25568680 |
T |
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| Q |
101 |
tcacaaaattgattcaaattacttctcaatataaggtctcagtggacaaatgaattcaatccagcatactcttattacctgtattactgctatgcaaact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
25568681 |
tcacaaaattgattcaaattacttctcaatataaggtctcagtggacaaatgaattcaatccagcatactcttattacctctattactgctatgcaaact |
25568780 |
T |
|
| Q |
201 |
tgtacacactcaacaaggtttatgttattaaccat |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
25568781 |
tgtacacactcaacaaggtttatgttattaaccat |
25568815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 25 - 230
Target Start/End: Original strand, 25465214 - 25465423
Alignment:
| Q |
25 |
ctactacttgataagtgtttaatgccctcagaactgtaatcaacaattttacaacacaaaaataa----gtcaaattccctcacaaaattgattcaaatt |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||| |
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| T |
25465214 |
ctactacttgataagtgtttaatgccctcagaactgtaatcaacaattttacaacacaaaaataatcacgtcaaattccctcacaaaattgctccaaatc |
25465313 |
T |
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| Q |
121 |
acttctcaatataaggtctcagtggacaaatgaattcaatccagcatactcttattacctgtattactgctatgcaaacttgtacacactcaacaaggtt |
220 |
Q |
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| T |
25465314 |
acttctcaatataaggtctcagtggacaaatgaattcaatccagcatacacttattacctctattactgctatgcaaacttgtacacactcaacaaggtt |
25465413 |
T |
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| Q |
221 |
tatgttatta |
230 |
Q |
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|||||||||| |
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| T |
25465414 |
tatgttatta |
25465423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 25672201 - 25672435
Alignment:
| Q |
1 |
ctattgatgtttgaaaggattctactactacttgataagtgtttaatgccctcagaactgtaatcaacaattttacaacacaaaaataa----gtcaaat |
96 |
Q |
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||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
25672201 |
ctattgaaatttgaaaggattctactacta---gataagtgtgtaatgccctcagaactgtaatcaacaattttacaacacaaaaataatcacgtcaaat |
25672297 |
T |
|
| Q |
97 |
tccctcacaaaattgattcaaattacttctcaatataaggtctcagtggacaaatgaattcaatccagcatactcttattacctgtattactgctatgca |
196 |
Q |
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||| ||||||||||| | ||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
25672298 |
tcc-tcacaaaattgctccaaatcacttctcagtataaggtctcagtggacaaatgaattcaatccagcatacacttattacctctattactgctatgca |
25672396 |
T |
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| Q |
197 |
aacttgtacacactcaacaaggtttatgttattaaccat |
235 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |
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| T |
25672397 |
aacttgtacacactcaacaaggtttatgttattcaccat |
25672435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 138 - 242
Target Start/End: Original strand, 25304264 - 25304368
Alignment:
| Q |
138 |
ctcagtggacaaatgaattcaatccagcatactcttattacctgtattactgctatgcaaacttgtacacactcaacaaggtttatgttattaaccattc |
237 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
25304264 |
ctcaatggacaaatgaattcaatccagcatactcttattacctctattactgctatgcaaacttgtacacactcaacaaggtttatgttattcaccattc |
25304363 |
T |
|
| Q |
238 |
atctc |
242 |
Q |
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|||| |
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| T |
25304364 |
gtctc |
25304368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 138 - 242
Target Start/End: Original strand, 25441450 - 25441554
Alignment:
| Q |
138 |
ctcagtggacaaatgaattcaatccagcatactcttattacctgtattactgctatgcaaacttgtacacactcaacaaggtttatgttattaaccattc |
237 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
25441450 |
ctcaatggacaaatgaattcaatccagcatactcttattacctctattactgctatgcaaacttgtacacactcaacaaggtttatgttattcaccattc |
25441549 |
T |
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| Q |
238 |
atctc |
242 |
Q |
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|||| |
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| T |
25441550 |
gtctc |
25441554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 138 - 242
Target Start/End: Complemental strand, 533 - 429
Alignment:
| Q |
138 |
ctcagtggacaaatgaattcaatccagcatactcttattacctgtattactgctatgcaaacttgtacacactcaacaaggtttatgttattaaccattc |
237 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
533 |
ctcaatggacaaatgaattcaatccagcatactcttattacctctattactgctatgcaaacttgtacacactcaacaaggtttatgttattcaccattc |
434 |
T |
|
| Q |
238 |
atctc |
242 |
Q |
| |
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|||| |
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|
| T |
433 |
gtctc |
429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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