View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20327_high_32 (Length: 238)

Name: NF20327_high_32
Description: NF20327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20327_high_32
NF20327_high_32
[»] chr5 (16 HSPs)
chr5 (1-238)||(3299498-3299735)
chr5 (1-238)||(3392391-3392628)
chr5 (5-120)||(1849934-1850049)
chr5 (1-123)||(40418248-40418367)
chr5 (5-120)||(1163690-1163802)
chr5 (1-123)||(39879779-39879898)
chr5 (1-123)||(38987670-38987789)
chr5 (1-123)||(39726383-39726502)
chr5 (142-238)||(40418404-40418497)
chr5 (1-123)||(39168811-39168930)
chr5 (1-123)||(39399824-39399943)
chr5 (142-238)||(38987826-38987919)
chr5 (142-238)||(39726545-39726638)
chr5 (142-238)||(39879941-39880034)
chr5 (155-238)||(1163593-1163676)
chr5 (155-238)||(1850063-1850146)
[»] chr4 (3 HSPs)
chr4 (11-123)||(25912292-25912401)
chr4 (142-238)||(25912159-25912252)
chr4 (51-117)||(44444772-44444838)


Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 3299498 - 3299735
Alignment:
Q  1 gctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtattttaaaacccggtgacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299498 gctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtattttaaaacccggtgacc 3299597  T
Q  101 atgctcttggttatgacctgtcttctggaggagtagatacaaaccttcctgctgccattttgatcaccaagattagttatgcccaagaggagaatggtag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  3299598 atgctcttggttatgacctgtcttctggaggagtagatacaaaccttcctgctgccattttgatcaccaaaattagttatgccgaagaggagaatggtag 3299697  T
Q  201 agttgttgctgttcaggataagtgggaatctgattatc 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3299698 agttgttgctgttcaggataagtgggaatctgattatc 3299735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 3392391 - 3392628
Alignment:
Q  1 gctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtattttaaaacccggtgacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392391 gctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtattttaaaacccggtgacc 3392490  T
Q  101 atgctcttggttatgacctgtcttctggaggagtagatacaaaccttcctgctgccattttgatcaccaagattagttatgcccaagaggagaatggtag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  3392491 atgctcttggttatgacctgtcttctggaggagtagatacaaaccttcctgctgccattttgatcaccaaaattagttatgccgaagaggagaatggtag 3392590  T
Q  201 agttgttgctgttcaggataagtgggaatctgattatc 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3392591 agttgttgctgttcaggataagtgggaatctgattatc 3392628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 1849934 - 1850049
Alignment:
Q  5 atgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtattttaaaacccggtgaccatgc 104  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||    
T  1849934 atgccatagttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaggactcatcttagtcgtattttaaaacctggtgaccatgc 1850033  T
Q  105 tcttggttatgacctg 120  Q
    ||||||||||||||||    
T  1850034 tcttggttatgacctg 1850049  T

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Target: chr5; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 40418248 - 40418367
Alignment:
Q  1 gctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtattttaaaacccggtgacc 100  Q
    ||||||||  |||||||||||||||||||||||||||||||| |   ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  40418248 gctgatgctgtggttgctcgtgtgaaagatattggaaataatga---cacaacttttcaaatcaggactcatcttggtcgtattttaaaacccggtgacc 40418344  T
Q  101 atgctcttggttatgacctgtct 123  Q
    |||||||||||||||||||||||    
T  40418345 atgctcttggttatgacctgtct 40418367  T

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Target: chr5; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 5 - 120
Target Start/End: Complemental strand, 1163802 - 1163690
Alignment:
Q  5 atgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtattttaaaacccggtgaccatgc 104  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||   ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1163802 atgccatagttgctcgtgtcaaagatattggaaataataatcacac---ttttcaaatcaggactcatcttggtcgtattttaaaacccggtgaccatgc 1163706  T
Q  105 tcttggttatgacctg 120  Q
    ||||||||||||||||    
T  1163705 tcttggttatgacctg 1163690  T

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Target: chr5; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 39879779 - 39879898
Alignment:
Q  1 gctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtattttaaaacccggtgacc 100  Q
    ||||||||  ||||||||||||||||||||| |||||||||| |   ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  39879779 gctgatgctgtggttgctcgtgtgaaagatactggaaataatga---cacaacttttcaaatcaggactcatcttggtcgtattttaaaacccggtgacc 39879875  T
Q  101 atgctcttggttatgacctgtct 123  Q
    |||||||||||||||||||||||    
T  39879876 atgctcttggttatgacctgtct 39879898  T

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Target: chr5; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 38987670 - 38987789
Alignment:
Q  1 gctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtattttaaaacccggtgacc 100  Q
    ||||||||  ||||||||||||||||||||| |||||||||| |   ||||||||||||||||| ||||||||| |||||||| ||||||||||||||||    
T  38987670 gctgatgctgtggttgctcgtgtgaaagatactggaaataatga---cacaacttttcaaatcaggactcatctcggtcgtatcttaaaacccggtgacc 38987766  T
Q  101 atgctcttggttatgacctgtct 123  Q
    |||||||||||||||||||||||    
T  38987767 atgctcttggttatgacctgtct 38987789  T

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Target: chr5; HSP #8
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 39726383 - 39726502
Alignment:
Q  1 gctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtattttaaaacccggtgacc 100  Q
    ||||||||  ||||||||||||||||||||| |||||||||| |   ||||||||||||||||| ||||||||| |||||||| ||||||||||||||||    
T  39726383 gctgatgctgtggttgctcgtgtgaaagatactggaaataatga---cacaacttttcaaatcaggactcatctcggtcgtatcttaaaacccggtgacc 39726479  T
Q  101 atgctcttggttatgacctgtct 123  Q
    |||||||||||||||||||||||    
T  39726480 atgctcttggttatgacctgtct 39726502  T

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Target: chr5; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 142 - 238
Target Start/End: Original strand, 40418404 - 40418497
Alignment:
Q  142 aaccttcctgctgccattttgatcaccaagattagttatgcccaagaggagaatggtagagttgttgctgttcaggataagtgggaatctgattatc 238  Q
    ||||||||||||||||||||||||||||||||||||||||||   || ||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  40418404 aaccttcctgctgccattttgatcaccaagattagttatgcc---gaagagaatggtagagttgttgctcttcatgataagtgggaatctgattatc 40418497  T

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Target: chr5; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 39168811 - 39168930
Alignment:
Q  1 gctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtattttaaaacccggtgacc 100  Q
    ||||||||| |||||||||||||| ||||| ||||||||||| |   |||||||||||||||||| |||||||| |||| |||||||||| ||||||||     
T  39168811 gctgatgccgtggttgctcgtgtggaagattttggaaataatga---cacaacttttcaaatcaaaactcatctaggtcatattttaaaatccggtgact 39168907  T
Q  101 atgctcttggttatgacctgtct 123  Q
    ||||||||||||||||| |||||    
T  39168908 atgctcttggttatgacttgtct 39168930  T

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Target: chr5; HSP #11
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 39399824 - 39399943
Alignment:
Q  1 gctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtattttaaaacccggtgacc 100  Q
    ||||||||| |||||||||||||| || || ||||||||||| |   ||||||||||||||||| |||||||||||||| |||||||||| ||||||||     
T  39399824 gctgatgccgtggttgctcgtgtggaaaattttggaaataatga---cacaacttttcaaatcaggactcatcttggtcatattttaaaatccggtgact 39399920  T
Q  101 atgctcttggttatgacctgtct 123  Q
    ||||||||||||||||| |||||    
T  39399921 atgctcttggttatgacttgtct 39399943  T

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Target: chr5; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 142 - 238
Target Start/End: Original strand, 38987826 - 38987919
Alignment:
Q  142 aaccttcctgctgccattttgatcaccaagattagttatgcccaagaggagaatggtagagttgttgctgttcaggataagtgggaatctgattatc 238  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||| |   ||||||||||||||||||||  ||||||||||||||||||||||||    
T  38987826 aaccttcctgctgccattttgatcagcaagattagttatgccgaagtg---aatggtagagttgttgctgtcaaggataagtgggaatctgattatc 38987919  T

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Target: chr5; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 142 - 238
Target Start/End: Original strand, 39726545 - 39726638
Alignment:
Q  142 aaccttcctgctgccattttgatcaccaagattagttatgcccaagaggagaatggtagagttgttgctgttcaggataagtgggaatctgattatc 238  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||| |   ||||||||||||||||||||  ||||||||||||||||||||||||    
T  39726545 aaccttcctgctgccattttgatcagcaagattagttatgccgaagtg---aatggtagagttgttgctgtcaaggataagtgggaatctgattatc 39726638  T

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Target: chr5; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 142 - 238
Target Start/End: Original strand, 39879941 - 39880034
Alignment:
Q  142 aaccttcctgctgccattttgatcaccaagattagttatgcccaagaggagaatggtagagttgttgctgttcaggataagtgggaatctgattatc 238  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||| |   ||||||||||||||||||||  ||||||||||||||||||||||||    
T  39879941 aaccttcctgctgccattttgatcagcaagattagttatgccgaagtg---aatggtagagttgttgctgtcaaggataagtgggaatctgattatc 39880034  T

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Target: chr5; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 1163676 - 1163593
Alignment:
Q  155 ccattttgatcaccaagattagttatgcccaagaggagaatggtagagttgttgctgttcaggataagtgggaatctgattatc 238  Q
    |||||||||| ||||||||||||| |||  ||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  1163676 ccattttgattaccaagattagttttgctaaagaggagaatggtagagttgttcctgttcaggataagtgggaatctggttatc 1163593  T

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Target: chr5; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 155 - 238
Target Start/End: Original strand, 1850063 - 1850146
Alignment:
Q  155 ccattttgatcaccaagattagttatgcccaagaggagaatggtagagttgttgctgttcaggataagtgggaatctgattatc 238  Q
    |||||||||| ||||||||||||| |||  |||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  1850063 ccattttgattaccaagattagttttgctaaagaggagaatggtagagttattcctgttcaggataagtgggaatctgattatc 1850146  T

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Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 11 - 123
Target Start/End: Complemental strand, 25912401 - 25912292
Alignment:
Q  11 tggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtattttaaaacccggtgaccatgctcttgg 110  Q
    |||||||||||||||||||||||||||||||| |   ||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||    
T  25912401 tggttgctcgtgtgaaagatattggaaataatga---cacaacttttcaaatcaggactcatcttggtcgtattctaaaacccgatgaccatgctcttgg 25912305  T
Q  111 ttatgacctgtct 123  Q
    |||||||||||||    
T  25912304 ttatgacctgtct 25912292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 142 - 238
Target Start/End: Complemental strand, 25912252 - 25912159
Alignment:
Q  142 aaccttcctgctgccattttgatcaccaagattagttatgcccaagaggagaatggtagagttgttgctgttcaggataagtgggaatctgattatc 238  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||   ||||||||||||||||||||||||||||||||||||||||||||||    
T  25912252 aaccttcatgctgccattttgatcaccaagattagttatgccgaagag---aatggtagagttgttgctgttcaggataagtgggaatctgattatc 25912159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 51 - 117
Target Start/End: Complemental strand, 44444838 - 44444772
Alignment:
Q  51 aacttttcaaatcaagactcatcttggtcgtattttaaaacccggtgaccatgctcttggttatgac 117  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  44444838 aacttttcaaatcaagactcatcttggtcgtattttaaaacctggtgactatgctcttggttatgac 44444772  T

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