View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20327_high_9 (Length: 480)
Name: NF20327_high_9
Description: NF20327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20327_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 424; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 5 - 466
Target Start/End: Original strand, 30165907 - 30166361
Alignment:
| Q |
5 |
gactcttgatttttcttttcatcctcctctggatttttctccaatatgctttacaaattgcggtgatatagttggaccaattgctggtggtggattagca |
104 |
Q |
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| T |
30165907 |
gactcttgatttttcttttcatcctcctctggatttttctccaatatgctttacaaattgcggtgatatagttggaccaattgctggtggtggattagca |
30166006 |
T |
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| Q |
105 |
aagcttaatgacaaaggacaactgcaagagtatcattcctatggtgaccgttacttgatgagatcccaaatggcggtgtatatagagtctctgctttcac |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30166007 |
aagcttaatgacaaaggacaactgcaagagtatcattcctatggtgaccgttactttatgagatcccaaatggcggtgtatatagagtctctgctttcac |
30166106 |
T |
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| Q |
205 |
tccccgatgggcgatggctctgagcaagcttaagataactagtgataccaaacaataagaatttgatttgattgtgaaatatttgtattttccattttac |
304 |
Q |
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| T |
30166107 |
tccccgatgg-------cactgagcaagcttaagataactagtgataccaaacaataagaatttgatttgattgtgaaatatttgtattttccattttac |
30166199 |
T |
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| Q |
305 |
tgatactgatcttgtattatgaactcttggtatcatgaagcatgggaagtgataggcagaatactgaaactgggaaaagacataacataatcgagagtag |
404 |
Q |
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| T |
30166200 |
tgatattgatcttgtattatgaactcttggtatcatgaagcatgggaagtgataggcagaatactgaaactgggaaaagacataacataatcgagagtag |
30166299 |
T |
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| Q |
405 |
aggtgatctttatcagcagctcaaatgccagttcacaaatcacatagctctgctgtttcctc |
466 |
Q |
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| T |
30166300 |
aggtgatctttatcagcagctcaaatgccagttcacaaatcacatagctctgctgtttcctc |
30166361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 6 - 182
Target Start/End: Complemental strand, 30124961 - 30124785
Alignment:
| Q |
6 |
actcttgatttttcttttcatcctcctctggatttttctccaatatgctttacaaattgcggtgatatagttgg-accaattgctggtggtggattagca |
104 |
Q |
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||||||| ||||||| | |||||| ||| | | ||||| ||||||| ||||||||| | ||||||||||||||| || |||| | | |||||||| | |
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| T |
30124961 |
actcttgttttttctatgcatcctgctccgcacttttccccaatatcctttacaaaattcggtgatatagttggaactgattg-taggggtggattcgtg |
30124863 |
T |
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| Q |
105 |
aagcttaatgacaaaggacaactgcaagagtatcattcctatggtgaccgttacttgatgagatcccaaatggcggtg |
182 |
Q |
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| T |
30124862 |
aagtttaatgacaaaggacagctgctagagcatcactcccgtggtgattgttactttgtaagatctcaaatagcggtg |
30124785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 208
Target Start/End: Complemental strand, 30130753 - 30130710
Alignment:
| Q |
165 |
agatcccaaatggcggtgtatatagagtctctgctttcactccc |
208 |
Q |
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| T |
30130753 |
agatcccaaatggcggtgtatacagagtctcttctttcattccc |
30130710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 30130884 - 30130841
Alignment:
| Q |
37 |
atttttctccaatatgctttacaaattgcggtgatatagttgga |
80 |
Q |
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| T |
30130884 |
atttttccctaatatcctttacaaattgcggtgatatagttgga |
30130841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 30124655 - 30124610
Alignment:
| Q |
313 |
atcttgtattatgaactcttggtatcatgaagcatgggaagtgata |
358 |
Q |
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| T |
30124655 |
atcttgtattatgaacgattgctatcatgaagcatgagaagtgata |
30124610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 146; Significance: 1e-76; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 3 - 463
Target Start/End: Complemental strand, 43164688 - 43164236
Alignment:
| Q |
3 |
aagactcttgatttttcttttcatcctcctctggatttttctccaatatgctttacaaattgcggtgatatagttggaccaattgctggtggtggattag |
102 |
Q |
| |
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|||||| |||||||||||||| ||||| ||| |||||||| ||| |||||||||||||| | |||||||| ||||||||| |||||| ||||||||||| |
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| T |
43164688 |
aagacttttgatttttcttttgatcctgctccagatttttccccagtatgctttacaaatggtggtgatattgttggaccagttgctgatggtggattag |
43164589 |
T |
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| Q |
103 |
caaagcttaatgacaaaggacaactgcaagagtatcattcctatggtgaccgttacttgatgagatcccaaatggcggtgtatatagagtctctgctttc |
202 |
Q |
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| T |
43164588 |
cgaagcttgatgacaaaggaggcctgctagagtatcactcctatggtgattgtcactttgtaagatcgcagatatcggtgtatacagaatctctgctttc |
43164489 |
T |
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| Q |
203 |
actccccgatgggcgatggctctgagcaagcttaagataactagtgataccaaacaataagaatttgatttgattgtgaaatatttgtattttccatttt |
302 |
Q |
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|||||| ||||| | ||||||||||||||||| || ||||||| ||||| | |||||||| |||||||||||||| ||||| || |||| |
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| T |
43164488 |
actccctgatgg-------cactgagcaagcttaagatgaccagtgataacaaactagaagaattt-----gattgtgaaatattcatatttaccttttt |
43164401 |
T |
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| Q |
303 |
actgatactgatcttgtattatgaactcttggt----atcatgaagcatgggaagtgataggcagaatactgaaactgggaaaagacataacataatcga |
398 |
Q |
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| T |
43164400 |
agtgatatctatcttgtatcatgaactcttggttggaatcataaagcatgtgaagtgataggcaaaatagtgaaattgcaagaagacataacataattga |
43164301 |
T |
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| Q |
399 |
gagtagaggtgatctttatcagcagctcaaatgccagttcacaaatcacatagctctgctgtttc |
463 |
Q |
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|||||||| |||||||||||||||||||||||| |||||| |||| | ||||||||| ||||| |
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| T |
43164300 |
gagtagagttgatctttatcagcagctcaaatgttggttcacgaatcgcgtagctctgccgtttc |
43164236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 41311012 - 41310811
Alignment:
| Q |
1 |
ctaagactcttgatttttcttttcatcctcctctggatttttctccaatatgctttacaaattgcggtgatatagttggaccaattgctggtggtggatt |
100 |
Q |
| |
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|||||||| |||||||||||||||| || || ||| ||||| ||| |||||||||||||||| || ||||| ||||||||| || ||||||||| |
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| T |
41311012 |
ctaagacttttgatttttcttttcaccccgatccggagttttccccattatgctttacaaattgtggcgatattgttggacca---gccaatggtggatt |
41310916 |
T |
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| Q |
101 |
agcaaagcttaatgacaaaggacaactgcaagagtatcattcctatggtgaccgttacttgatgagatcccaaatggcggtgtatatagagtctctgctt |
200 |
Q |
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|| |||||||||| |||||||||||||| | ||||||| |||||| ||||||||| ||| ||||||||||||||||||||||||| ||||||||| ||| |
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| T |
41310915 |
agttaagcttaatgtcaaaggacaactgctaaagtatcactcctatagtgaccgttgctttatgagatcccaaatggcggtgtatacagagtctctactt |
41310816 |
T |
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| Q |
201 |
tcact |
205 |
Q |
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||||| |
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| T |
41310815 |
tcact |
41310811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 233 - 331
Target Start/End: Complemental strand, 41310807 - 41310714
Alignment:
| Q |
233 |
cttaagataactagtgataccaaacaataagaatttgatttgattgtgaaatatttgtattttccattttactgatactgatcttgtattatgaactct |
331 |
Q |
| |
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|||||||| |||||||||||||||| | |||||||| |||||||||||||| |||||| ||||||||||||| ||||||||||||||||||| |
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| T |
41310807 |
cttaagatgactagtgataccaaactagaagaattt-----gattgtgaaatattggtatttatcattttactgatatctatcttgtattatgaactct |
41310714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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