View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20327_low_11 (Length: 445)
Name: NF20327_low_11
Description: NF20327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20327_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 19 - 435
Target Start/End: Original strand, 34706948 - 34707364
Alignment:
| Q |
19 |
tgaagaccccacttcgaaacatcaaatagatgtcttaaattctaaattaaataaaagtgtgtttgtatcacattatcggacatacgacataattctgcaa |
118 |
Q |
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| T |
34706948 |
tgaagaccccacttcgcaacatcaaatagatgtcttaaattctaaattaaataaaagtgtgtttgtatcacattatcggacatacgacataattctgcaa |
34707047 |
T |
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| Q |
119 |
gaatgctgatcaaagttaaatttctaaaagagacataattaggagattgtttcaaggacatatacataattttgttttagctataagagcagcactaatt |
218 |
Q |
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| T |
34707048 |
gaatgctgatcaaagttaaatttctaaaagagacataattaggagattgtttcaaggacatatacataattttgttttagctataagagcagcactaatt |
34707147 |
T |
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| Q |
219 |
gctagcacatggttgcatgaaaaaagtagatatcacaatgaaacagatcagagaaatcacaatcatggtccctttataagcaatgctatattgctaactc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34707148 |
gctagcacatggttgcatgaaaaaagtagatatcacaatgaaacagatcagagaaatcacaatcatggtccctttataagcaatgctatattgctaactc |
34707247 |
T |
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| Q |
319 |
ctgtctattatatataaagcattgttatggtataggtagacctcaaacatttattgattgcaatagcatatctatcattctaaccaccatttgcttcctt |
418 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34707248 |
ctgtctattatttataaagcattgttatggtataggtagacctcaaacatttattgattgcaatagcatatctatcattctaaccaccatttgcttcctt |
34707347 |
T |
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| Q |
419 |
aaaggaactagtttcat |
435 |
Q |
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| T |
34707348 |
aaaggaactagtttcat |
34707364 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 38552485 - 38552444
Alignment:
| Q |
201 |
ataagagcagcactaattgctagcacatggttgcatgaaaaa |
242 |
Q |
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|||| ||| |||||||||||||||||||| |||||||||||| |
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| T |
38552485 |
ataatagccgcactaattgctagcacatgcttgcatgaaaaa |
38552444 |
T |
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