View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20327_low_12 (Length: 437)
Name: NF20327_low_12
Description: NF20327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20327_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 228 - 428
Target Start/End: Complemental strand, 27122794 - 27122594
Alignment:
| Q |
228 |
ggattaattacatatgaatagaagacaaacggacaatatgttgcaccgttggatctttttggtgtatatataatcatagaaacatagttttgtgagatac |
327 |
Q |
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| T |
27122794 |
ggattaattacatatgaaaagaagacaaacagacaatatgttgcacagttagatctttttggtgtatatataatcatagaaacatagttttgtgagatac |
27122695 |
T |
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| Q |
328 |
aatggaaaatatcattatcataggtactaatcattcattatgattctgatgatcatcacgtccacgacacctatttataggggagcaacctcgagtataa |
427 |
Q |
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| T |
27122694 |
aatggaaaatatcattatcataggtactaatcattcattatgattctgatgatcatcacgtccacgacacctatttataggggagcaacctcgagtgtaa |
27122595 |
T |
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| Q |
428 |
t |
428 |
Q |
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| T |
27122594 |
t |
27122594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 27123057 - 27122900
Alignment:
| Q |
18 |
taattacaagaaacatactctagatttttacttaaggaatcagaaaaaataaataa-ggtcaaacttgaagagcaacgcaaagaaagtaaattatttatg |
116 |
Q |
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| T |
27123057 |
taattaccagaaagatactctatatttttacttgaggaatcaggaaaaataaataaaggtcaaacttgaagagcaacacaaagaaagtaaattatttttg |
27122958 |
T |
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| Q |
117 |
ccagaaatataaggaagacttatgccaaagattgcacaaacttaatacaaaggggaac |
174 |
Q |
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| T |
27122957 |
ccagaaatataagaaagacttatgccaaagattgcacaaacttaatacaaagaggaac |
27122900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 263
Target Start/End: Original strand, 2601690 - 2601723
Alignment:
| Q |
230 |
attaattacatatgaatagaagacaaacggacaa |
263 |
Q |
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| T |
2601690 |
attaattacacatgaatagaagacaaacggacaa |
2601723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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