View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20327_low_14 (Length: 425)
Name: NF20327_low_14
Description: NF20327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20327_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 9 - 409
Target Start/End: Original strand, 46958912 - 46959312
Alignment:
| Q |
9 |
agatgaatctagctccagggttattgttactacaatcaacaaaaatggtataagagggagggtcttgagttttgtgggtgacaaggcggccagaaagagg |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
46958912 |
agatgaatctagctccagggttattgttactacaatcaacaaaaatggtataagagggagggtgttgagttttgtgggtgacaaggcggccagaaagagg |
46959011 |
T |
|
| Q |
109 |
atagaaatggaaaagagcatgagagagggagtatttaagcttcttcaatagactctcaatgaaatcttgttgattatttggtgaagttgttggttttttg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46959012 |
atagaaatggaaaagagcatgagagagggagtatttaagcttcttcaatagactctcaatgaaatcttgttgattatttggtgaagttgttggttttttg |
46959111 |
T |
|
| Q |
209 |
aataataggcctttttggatatagtgcatagatgacatagcaatatcccaacctgttaaataagaaatttgctttgaatcttcaatagggtgtagtggtt |
308 |
Q |
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| T |
46959112 |
aataataggcctttttggatatagtgcatagatgacatagcaatatcccaacctgttaaataagaaatttgctttgaatcttcaatagggtgtagtggtt |
46959211 |
T |
|
| Q |
309 |
tgataaaacattctgaaactctttgagcgatagaggatgtcgtcattcaaatattaagcagaaaacaacacacaatgttgttgttgcaagagagatcata |
408 |
Q |
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| T |
46959212 |
tgataaaacattctgaaactctttgaacgatagaggatgtcatcattcaaatattaagcagaaaacaacacacaatgttgttgttgcaagagagatcata |
46959311 |
T |
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| Q |
409 |
c |
409 |
Q |
| |
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| T |
46959312 |
c |
46959312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 9 - 327
Target Start/End: Original strand, 46956077 - 46956395
Alignment:
| Q |
9 |
agatgaatctagctccagggttattgttactacaatcaacaaaaatggtataagagggagggtcttgagttttgtgggtgacaaggcggccagaaagagg |
108 |
Q |
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||||||||||||||| | ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46956077 |
agatgaatctagctctggtgttatcgttactgcaatcaacaaaaatggtataagagggagggtcttgagttttgtgggtgacaaggcggccagaaagagg |
46956176 |
T |
|
| Q |
109 |
atagaaatggaaaagagcatgagagagggagtatttaagcttcttcaatagactctcaatgaaatcttgttgattatttggtgaagttgttggttttttg |
208 |
Q |
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|||||||||||||||||||||||||| ||||| ||| ||||||| |||||| |||| |||||||||||||| |||||||||||| |||||||||||||| |
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| T |
46956177 |
atagaaatggaaaagagcatgagagaaggagtgtttgagcttctccaatagtttctcgatgaaatcttgttggttatttggtgaaattgttggttttttg |
46956276 |
T |
|
| Q |
209 |
aataataggcctttttggatatagtgcatagatgacatagcaatatcccaacctgttaaataagaaatttgctttgaatcttcaatagggtgtagtggtt |
308 |
Q |
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| T |
46956277 |
aataataggcctttttggatgtagtgcatagatgacatagcaatatcccagcttgttaaataacaactttgttttgaatcttcaatagggtgtagtggtt |
46956376 |
T |
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| Q |
309 |
tgataaaacattctgaaac |
327 |
Q |
| |
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||||||||||||||||||| |
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| T |
46956377 |
tgataaaacattctgaaac |
46956395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 10 - 360
Target Start/End: Original strand, 46951720 - 46952058
Alignment:
| Q |
10 |
gatgaatctagctccagggttattgttactacaatcaacaaaaatggtataagagggagggtcttgagttttgtgggtgacaaggcggccagaaagagga |
109 |
Q |
| |
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||||||||||||||| | |||||||||||| |||||||| ||||| |||||| |||||||||||| | ||| || || ||||| || || || | |||| |
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| T |
46951720 |
gatgaatctagctccggagttattgttactgcaatcaacgaaaatattataagtgggagggtcttgggatttttgtgtaacaagacgacctgataaagga |
46951819 |
T |
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| Q |
110 |
tagaaatggaaaagagcatgagagagggagtatttaagcttcttcaatagactctcaatgaaatcttgttgattatttggtgaagttgttggttttttga |
209 |
Q |
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|||||||| || | |||| |||||||||||| ||| || |||| || ||| | | |||||||| |||||| |||||||| ||||||| |
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| T |
46951820 |
tagaaatgaaataaagcaagagagagggagtgtttgagtttctctaaaagattatgaatgaaatgttgttggttatttggc------------tttttga |
46951907 |
T |
|
| Q |
210 |
ataataggcctttttggatatagtgcatagatgacatagcaatatcccaacctgttaaataagaaatttgctttgaatcttcaatagggtgtagtggttt |
309 |
Q |
| |
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|||| |||||||| |||||||||| |||||| ||||| |||||||||||| ||| ||||| || |||| ||||| ||| ||| |||||||||||||| |
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| T |
46951908 |
ataagaggcctttctggatatagttcatagaggacatggcaatatcccaagttgtcaaatagcaattttggtttgactctggaatggggtgtagtggttt |
46952007 |
T |
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| Q |
310 |
gataaaacattctgaaactctttgagcgatagaggatgtcgtcattcaaat |
360 |
Q |
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| T |
46952008 |
gataaaacattctgaaacacgttgaatgataggggaagtcatcattcaaat |
46952058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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