View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20327_low_17 (Length: 363)
Name: NF20327_low_17
Description: NF20327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20327_low_17 |
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| [»] scaffold0713 (1 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 9e-58; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 14648773 - 14648652
Alignment:
| Q |
12 |
atgaaagaacaaagacgaaagaggaatacgggaaagagaatgagcaaagggtgtgtgggaaaaatctagtagcttccatgttttgtctacatctatttca |
111 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14648773 |
atgaaagaacaaagaggaaagaggaatacgggaaagagaatgagaaaagggtgtgtgggaaaaatctagtagcttccatgttttgtctacatctatttca |
14648674 |
T |
|
| Q |
112 |
tttaattactattattttaatt |
133 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
14648673 |
tttaattactattattttaatt |
14648652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 14658563 - 14658442
Alignment:
| Q |
12 |
atgaaagaacaaagacgaaagaggaatacgggaaagagaatgagcaaagggtgtgtgggaaaaatctagtagcttccatgttttgtctacatctatttca |
111 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14658563 |
atgaaagaacaaagaggaaagaggaatacgggaaagagaatgagaaaagggtgtgtgggaaaaatctagtagcttccatgttttgtctacatctatttca |
14658464 |
T |
|
| Q |
112 |
tttaattactattattttaatt |
133 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
14658463 |
tttaattactattattttaatt |
14658442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 17654886 - 17654992
Alignment:
| Q |
17 |
agaacaaagacgaaagaggaatacgggaaagagaatgagcaaagggtgtgtgggaaaaatctagtagcttccatgttttgtctacatctatttcatttaa |
116 |
Q |
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|||||| ||| ||||||| ||||||||||||||| ||| |||||||||| ||||||||||||||||||||| ||| | || ||| ||||||||||| |
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| T |
17654886 |
agaacagagaggaaagagtgatacgggaaagagaaagag-aaagggtgtgagggaaaaatctagtagcttccgtgtctggtttac----atttcatttaa |
17654980 |
T |
|
| Q |
117 |
ttactattattt |
128 |
Q |
| |
|
|||||||||||| |
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| T |
17654981 |
ttactattattt |
17654992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0713 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0713
Description:
Target: scaffold0713; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 12 - 128
Target Start/End: Complemental strand, 3603 - 3487
Alignment:
| Q |
12 |
atgaaagaacaaagacgaaagaggaatacgggaaagagaatgagcaaagggtgtgtgggaaaaatctagtagcttccatgttttgtctacatctatttca |
111 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3603 |
atgaaagaacaaagaggaaagaggaatacgggaaagagaatgagaaaagggtgtgtgggaaaaatctagtagcttccatgttttgtctacatctaattca |
3504 |
T |
|
| Q |
112 |
tttaattactattattt |
128 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
3503 |
tttaattactattattt |
3487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 104; Significance: 9e-52; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 27525734 - 27525619
Alignment:
| Q |
12 |
atgaaagaacaaagacgaaagaggaatacgggaaagagaatgagcaaagggtgtgtgggaaaaatctagtagcttccatgttttgtctacatctatttca |
111 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27525734 |
atgaaagaacaaagaggaaagaggaatacgggaaagagaatgagaaaagggtgtgtgggaaaaatctagtagcttccatgttttgtgtacatctatttca |
27525635 |
T |
|
| Q |
112 |
tttaattactattatt |
127 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
27525634 |
tttaattactattatt |
27525619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 245 - 343
Target Start/End: Original strand, 26629201 - 26629299
Alignment:
| Q |
245 |
atacaaacttcatcttctatcacagtcaaatagatacttcagagaattacaaattgcaaaagaagtatttgttgtggaaaaatttatatgtatgaactt |
343 |
Q |
| |
|
||||||| |||||||| ||||||| | ||||||||| |||| ||||||| ||||||||||| || ||| |||| |||||| |||||||||||||||||| |
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| T |
26629201 |
atacaaatttcatcttatatcacactgaaatagataattcaaagaattaaaaattgcaaaaaaaatatatgttttggaaacatttatatgtatgaactt |
26629299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 245 - 343
Target Start/End: Original strand, 26735177 - 26735275
Alignment:
| Q |
245 |
atacaaacttcatcttctatcacagtcaaatagatacttcagagaattacaaattgcaaaagaagtatttgttgtggaaaaatttatatgtatgaactt |
343 |
Q |
| |
|
||||||| |||||||| ||||||| | ||||||||| |||| ||||||| ||||||||||| || ||| |||| |||||| |||||||||||||||||| |
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| T |
26735177 |
atacaaatttcatcttatatcacactgaaatagataattcaaagaattaaaaattgcaaaaaaaatatatgttttggaaacatttatatgtatgaactt |
26735275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 27423031 - 27422971
Alignment:
| Q |
245 |
atacaaacttcatcttctatcacagtcaaatagatacttcagagaattacaaattgcaaaa |
305 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||| || | | |||| ||||||||||| |
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|
| T |
27423031 |
atacaaacttcatcttatatcacagttaaatagatagtttaagggattaaaaattgcaaaa |
27422971 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 12 - 129
Target Start/End: Original strand, 27199786 - 27199903
Alignment:
| Q |
12 |
atgaaagaacaaagacgaaagaggaatacgggaaagagaatgagcaaagggtgtgtgggaaaaatctagtagcttccatgttttgtctacatctatttca |
111 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
27199786 |
atgaaagaacagagaggaaagaggaatacgggaaagagaatgagaaaagggtgtgtgggaaaaatctagtagcttccgtgttttgtctacatctatttca |
27199885 |
T |
|
| Q |
112 |
tttaattactattatttt |
129 |
Q |
| |
|
||||||||||||| |||| |
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|
| T |
27199886 |
tttaattactattttttt |
27199903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 64332 - 64392
Alignment:
| Q |
245 |
atacaaacttcatcttctatcacagtcaaatagatacttcagagaattacaaattgcaaaa |
305 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||| || | | |||| ||||||||||| |
|
|
| T |
64332 |
atacaaacttcatcttatatcacagttaaatagatagtttaagggattaaaaattgcaaaa |
64392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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