View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20327_low_18 (Length: 358)
Name: NF20327_low_18
Description: NF20327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20327_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 15 - 340
Target Start/End: Original strand, 2442059 - 2442388
Alignment:
| Q |
15 |
agcaaaggatggataata---caccactaaacatttacgtgtcatttctaattctatatacaactatgactgttaatcaacnnnnnnn-atatcgttaaa |
110 |
Q |
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| T |
2442059 |
agcaaaggatggataataatacaccactaaacatttacgtgtcatttctaattctatatacaactatgactgttaatcaacttttttttatatcgttaaa |
2442158 |
T |
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| Q |
111 |
catttccgttaatgtcgtttgaacgcaaattatggatgaaaatggtacttcaaagctcaaagtagtcaaaaaggaaaaggggcacacgaaagttcacatg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2442159 |
catttccgttaatgtcgtttgaacgcaaattatggatgaaaatggtacttcaaagctcaaagtagtcaaaaaggaaaaggggcacacgaaagttcacatg |
2442258 |
T |
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| Q |
211 |
tccttatgacgttatattaggtaccacatttttcatatctagactagaaactatcttaattactaatttctttttgaataaatcttaattactatctaag |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2442259 |
tccttatgacgttatattaggtaccacatttttcatatctagactagaaactatcttaattactaatttctttttgaataaatcttaattactatctaag |
2442358 |
T |
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| Q |
311 |
cttaagaaatttgtgtgatgtgggctaaac |
340 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
2442359 |
cttaagaaatttgtgtgatgtgggctaaac |
2442388 |
T |
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