View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20327_low_19 (Length: 352)
Name: NF20327_low_19
Description: NF20327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20327_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 46531732 - 46531396
Alignment:
| Q |
1 |
caaatccacatatccttcatatcatcttgcaaaacaatagaagttaacaattctctacattcccccgcatgctcttcctcccatgccaacgacctccttc |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46531732 |
caaacccacatatccttcatatcatcttgcaaaacaatagaagttaacaattcactacattcccccgcatgctcttcctcccatgccaacgacctccttc |
46531633 |
T |
|
| Q |
101 |
tccaattccacacctcacacgccaaaccttatgagaatatctatgcgacaatcactaatttattctcaaataactcttacgaccttttgaactcatcatt |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
46531632 |
tccaattccacacctcacacgccaaaccttacgagaatatctatgcgacaatcactaatttattctcaaataactcttgcgaccttttgaactcatcatt |
46531533 |
T |
|
| Q |
201 |
aagcaaacctccttccaaccaaggatccctcaagaacatggtagagcacccatcacccaccacacgcccaattaatactactcccccttgaataaaattg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46531532 |
aagcaaacctccttccaaccaaggatccctcaagaacatggtagagcacccatcacccaccacacgcccaattaatactactcccccttgaataaaattg |
46531433 |
T |
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| Q |
301 |
aattctttcaacaaaatgagcatactccccctttgta |
337 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
46531432 |
aattctttcaacaaaatgagcatactccccctttgta |
46531396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 207 - 238
Target Start/End: Complemental strand, 15456018 - 15455987
Alignment:
| Q |
207 |
acctccttccaaccaaggatccctcaagaaca |
238 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
15456018 |
acctccttccaaccaaggatccctcaagaaca |
15455987 |
T |
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