View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20327_low_20 (Length: 348)
Name: NF20327_low_20
Description: NF20327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20327_low_20 |
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| [»] scaffold0637 (1 HSPs) |
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| [»] scaffold0702 (2 HSPs) |
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| [»] scaffold0662 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 19 - 338
Target Start/End: Complemental strand, 51186304 - 51185999
Alignment:
| Q |
19 |
gattaaagaaagtggttaatatcataaactctcatgttcctttctcctcttcttattcatctttttcagtctcctttcttcgcgtgcccacctttcttcg |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
51186304 |
gattaaagaaagtggttaatatcataaactctcatgttcctttctcctcttcttattcatctttttcagtctcctttcttc------------------g |
51186223 |
T |
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| Q |
119 |
agtttcaactcggcttcccactccgccttcaaatctttccacttgttctcaaaactattactaaacctcgtagcaattttgtgaacctcatccttccaag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51186222 |
agtttcaactcggcttcccactccgccttcaaatctttccacttgttctcaaaactattactaaacctcgtagcaattttgtgaacctcatccttccaag |
51186123 |
T |
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| Q |
219 |
ggtaaagcaatccatgagataatacaaacctcatatcctcagcaaactcatctggagttgaa----tataacttcaacttggcctcgatatcctttaaac |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
51186122 |
ggtaaagcaatccatgagataatacaaacctcatatcctcagcaaactcatctggagttgaatatatataacttcaacttggcctcgatatcctttaaac |
51186023 |
T |
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| Q |
315 |
tcctcggcattgacttcacctttg |
338 |
Q |
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|||||||||||||||||||||||| |
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| T |
51186022 |
tcctcggcattgacttcacctttg |
51185999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 155 - 312
Target Start/End: Original strand, 20692786 - 20692943
Alignment:
| Q |
155 |
ttccacttgttctcaaaactattactaaacctcgtagcaattttgtgaacctcatccttccaagggtaaagcaatccatgagataatacaaacctcatat |
254 |
Q |
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| T |
20692786 |
ttccacttgttctcaaaaatatcactaagcctcatagcaattttgtgaacaacatccctttgaggataaagccatccatgatagaacacaaacctcatat |
20692885 |
T |
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| Q |
255 |
cctcagcaaactcatctggagttgaatataacttcaacttggcctcgatatcctttaa |
312 |
Q |
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| T |
20692886 |
cctcagcaaactcatccggttttgaataaaatttcagctttgcttcgatatcttttaa |
20692943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 155 - 312
Target Start/End: Original strand, 20698264 - 20698421
Alignment:
| Q |
155 |
ttccacttgttctcaaaactattactaaacctcgtagcaattttgtgaacctcatccttccaagggtaaagcaatccatgagataatacaaacctcatat |
254 |
Q |
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|||||||||||||||||| ||| ||||| |||| |||||||||||||||| ||||| | ||| |||||| |||||||| | || ||||||||||||| |
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| T |
20698264 |
ttccacttgttctcaaaaatatcactaagcctcatagcaattttgtgaacaacatccctttgaggataaagccatccatgatagaacacaaacctcatat |
20698363 |
T |
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| Q |
255 |
cctcagcaaactcatctggagttgaatataacttcaacttggcctcgatatcctttaa |
312 |
Q |
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|||||||||||||||| || ||||||| || |||| ||| || |||||||| ||||| |
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| T |
20698364 |
cctcagcaaactcatccggttttgaataaaatttcagctttgcttcgatatcttttaa |
20698421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 155 - 312
Target Start/End: Complemental strand, 14007543 - 14007386
Alignment:
| Q |
155 |
ttccacttgttctcaaaactattactaaacctcgtagcaattttgtgaacctcatccttccaagggtaaagcaatccatgagataatacaaacctcatat |
254 |
Q |
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|||||||||||||||||| ||| ||||| ||| |||||||||||||||| ||||| | ||| |||||| |||||||| | || ||||||||||||| |
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| T |
14007543 |
ttccacttgttctcaaaaatatcactaagtctcatagcaattttgtgaacaacatccctttgaggataaagccatccatgatagaacacaaacctcatat |
14007444 |
T |
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| Q |
255 |
cctcagcaaactcatctggagttgaatataacttcaacttggcctcgatatcctttaa |
312 |
Q |
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||||||||||||| || || | |||||| || |||| |||||| |||||||| ||||| |
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| T |
14007443 |
cctcagcaaactcgtccggtgatgaataaaaattcagcttggcttcgatatcttttaa |
14007386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0637 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0637
Description:
Target: scaffold0637; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 156 - 312
Target Start/End: Original strand, 5318 - 5474
Alignment:
| Q |
156 |
tccacttgttctcaaaactattactaaacctcgtagcaattttgtgaacctcatccttccaagggtaaagcaatccatgagataatacaaacctcatatc |
255 |
Q |
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||||||||||||||||| ||| ||||| |||| |||||||||||||||| | ||| | ||| |||||| |||||||| | || |||||||||||||| |
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| T |
5318 |
tccacttgttctcaaaaatatcactaagcctcatagcaattttgtgaacaacgtccctttgaggataaagccatccatgatagaacacaaacctcatatc |
5417 |
T |
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| Q |
256 |
ctcagcaaactcatctggagttgaatataacttcaacttggcctcgatatcctttaa |
312 |
Q |
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||||||||||||||| || ||||||| || |||| ||| || |||||||| ||||| |
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| T |
5418 |
ctcagcaaactcatccggtattgaataaaatttcagctttgcttcgatatcttttaa |
5474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0702 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0702
Description:
Target: scaffold0702; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 282
Target Start/End: Original strand, 2115 - 2202
Alignment:
| Q |
195 |
ttttgtgaacctcatccttccaagggtaaagcaatccatgagataatacaaacctcatatcctcagcaaactcatctggagttgaata |
282 |
Q |
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|||||||||| ||||||||||||| ||| | ||||||||||| || |||| |||| ||| |||||||| ||||| || |||||||| |
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| T |
2115 |
ttttgtgaacatcatccttccaagtgtataataatccatgagagaaaacaagtctcacatcatcagcaaattcatcaggtgttgaata |
2202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0702; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 282
Target Start/End: Original strand, 5430 - 5516
Alignment:
| Q |
196 |
tttgtgaacctcatccttccaagggtaaagcaatccatgagataatacaaacctcatatcctcagcaaactcatctggagttgaata |
282 |
Q |
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||||||||| ||||||||||||| ||| | ||||||||||| || |||| |||| ||| |||||||| ||||| || |||||||| |
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| T |
5430 |
tttgtgaacatcatccttccaagtgtataataatccatgagagaaaacaagtctcacatcatcagcaaattcatcaggtgttgaata |
5516 |
T |
|
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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 282
Target Start/End: Original strand, 35172122 - 35172209
Alignment:
| Q |
195 |
ttttgtgaacctcatccttccaagggtaaagcaatccatgagataatacaaacctcatatcctcagcaaactcatctggagttgaata |
282 |
Q |
| |
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|||||||||| ||||||||||||| ||| | ||||||||||| || |||| |||| ||| |||||||| ||||| || |||||||| |
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| T |
35172122 |
ttttgtgaacatcatccttccaagtgtataataatccatgagagaaaacaagtctcacatcatcagcaaattcatcaggtgttgaata |
35172209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0662 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0662
Description:
Target: scaffold0662; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 282
Target Start/End: Complemental strand, 2666 - 2580
Alignment:
| Q |
196 |
tttgtgaacctcatccttccaagggtaaagcaatccatgagataatacaaacctcatatcctcagcaaactcatctggagttgaata |
282 |
Q |
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||||||||| ||||||||||||| ||| | ||||||||||| || |||| |||| ||| |||||||| ||||| || |||||||| |
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| T |
2666 |
tttgtgaacatcatccttccaagtgtataataatccatgagagaaaacaagtctcacatcatcagcaaattcatcaggtgttgaata |
2580 |
T |
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