View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20327_low_21 (Length: 338)
Name: NF20327_low_21
Description: NF20327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20327_low_21 |
 | |
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| [»] scaffold1493 (1 HSPs) |
| | |
|
| [»] scaffold0070 (1 HSPs) |
| | |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 25568382 - 25568060
Alignment:
| Q |
1 |
cttcgtgtctgtacacagtttcttataaacctcagttgtttgatcctcaacaaactacatacttaaaattggatagcaaagaaataatcattactatgcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25568382 |
cttcgtgtctgtacacagtttcttataaacctcagttgtttgatcctcaacaaactacatacttaaaattggatagcaaagaaataatcattactatgcc |
25568283 |
T |
|
| Q |
101 |
atattgtttacactttacttaccagttttatacttgcaaaaacacatacgaattcatatttgtttatactatgccatatttgtttatacttgcaatgcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25568282 |
atattgtttacactttacttaccagttttatacttgcaaaaacacatacgaattcatatttgtttatactatgccatatttgtttatacttgcaatgcca |
25568183 |
T |
|
| Q |
201 |
aaaagttagcaagagagaattgagaattgagagaaaataagagaaagttcttattgattgaaaactttttattcacattagcaatgaaattggatttaca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25568182 |
aaaagttagcaagagagaattgagaattgagagaaaataagagaaagttcttattgattgaaaactttttattcacattagcaatgaaattggatttaca |
25568083 |
T |
|
| Q |
301 |
tcatacttatatacatgctatgt |
323 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
25568082 |
tcatacttatatacatgctatgt |
25568060 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 210 - 323
Target Start/End: Complemental strand, 25334690 - 25334577
Alignment:
| Q |
210 |
caagagagaattgagaattgagagaaaataagagaaagttcttattgattgaaaactttttattcacattagcaatgaaattggatttacatcatactta |
309 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||| |
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|
| T |
25334690 |
caagagagaattgagagttgagagaaaacaagagaaagttcttattgattgaaaacttgttattcacattagcaatgaaattgggtttacgtcatactta |
25334591 |
T |
|
| Q |
310 |
tatacatgctatgt |
323 |
Q |
| |
|
|||||| ||||||| |
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|
| T |
25334590 |
tatacaagctatgt |
25334577 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 5 - 151
Target Start/End: Complemental strand, 25286687 - 25286541
Alignment:
| Q |
5 |
gtgtctgtacacagtttcttataaacctcagttgtttgatcctcaacaaactacatacttaaaattggatagcaaagaaataatcattactatgccatat |
104 |
Q |
| |
|
||||||| ||| |||||| ||||||||||||||||||||||||| |||||| |||| || |||||||||||||| |||||||||||| ||| |||||||| |
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|
| T |
25286687 |
gtgtctgcacatagtttcatataaacctcagttgtttgatcctccacaaaccacatcctcaaaattggatagcagagaaataatcatcactttgccatat |
25286588 |
T |
|
| Q |
105 |
tgtttaca--ctttacttaccagttttatacttgcaaaaacacatacga |
151 |
Q |
| |
|
|||| ||| || | ||||||||||| ||||||||||||||| ||||| |
|
|
| T |
25286587 |
tgttaacactctgtgcttaccagttt--tacttgcaaaaacacgtacga |
25286541 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 223 - 323
Target Start/End: Complemental strand, 25437778 - 25437678
Alignment:
| Q |
223 |
agaattgagagaaaataagagaaagttcttattgattgaaaactttttattcacattagcaatgaaattggatttacatcatacttatatacatgctatg |
322 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||||| ||| |||||||| |||||||||||| ||||||||||| |||||||| |||||| |
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|
| T |
25437778 |
agaattgagagaaaagaagggaaagttcttattgattgaaaacttgttactcacattaacaatgaaattgggtttacatcataggtatatacaagctatg |
25437679 |
T |
|
| Q |
323 |
t |
323 |
Q |
| |
|
| |
|
|
| T |
25437678 |
t |
25437678 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 227 - 323
Target Start/End: Complemental strand, 25299016 - 25298920
Alignment:
| Q |
227 |
ttgagagaaaataagagaaagttcttattgattgaaaactttttattcacattagcaatgaaattggatttacatcatacttatatacatgctatgt |
323 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||| ||| |||||||| |||||||||||| ||||||||||| |||||||| ||||||| |
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|
| T |
25299016 |
ttgagagaaaagaagggaaagttcttattgattgaaaacttgttactcacattaacaatgaaattgggtttacatcataggtatatacaagctatgt |
25298920 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 223 - 323
Target Start/End: Complemental strand, 25765563 - 25765463
Alignment:
| Q |
223 |
agaattgagagaaaataagagaaagttcttattgattgaaaactttttattcacattagcaatgaaattggatttacatcatacttatatacatgctatg |
322 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||| || ||| |||||||| |||||||||| | ||||||||||| |||||||| |||||| |
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|
| T |
25765563 |
agaattgagagaaaagaagggaaagttcttattgattgaaaatttgttagtcacattaacaatgaaattcggtttacatcataggtatatacaagctatg |
25765464 |
T |
|
| Q |
323 |
t |
323 |
Q |
| |
|
| |
|
|
| T |
25765463 |
t |
25765463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 211 - 307
Target Start/End: Complemental strand, 25464827 - 25464736
Alignment:
| Q |
211 |
aagagagaattgagaattgagagaaaataagagaaagttcttattgattgaaaactttttattcacattagcaatgaaattggatttacatcatact |
307 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
25464827 |
aagagagaattgagaattgtgagaaag-----gaaagttcttattgatttcaaactagttattcacattagcaatgaaattgggtttacatcatact |
25464736 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 257 - 304
Target Start/End: Original strand, 24883656 - 24883703
Alignment:
| Q |
257 |
attgaaaactttttattcacattagcaatgaaattggatttacatcat |
304 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
24883656 |
attgaaaacttgttattcacattagcaatgaaattgggtttacatcat |
24883703 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1493 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold1493
Description:
Target: scaffold1493; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 227 - 323
Target Start/End: Original strand, 1517 - 1613
Alignment:
| Q |
227 |
ttgagagaaaataagagaaagttcttattgattgaaaactttttattcacattagcaatgaaattggatttacatcatacttatatacatgctatgt |
323 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||| ||| |||||||| |||||||||||| ||||||||||| |||||||| ||||||| |
|
|
| T |
1517 |
ttgagagaaaagaagggaaagttcttattgattgaaaacttgttactcacattaacaatgaaattgggtttacatcataggtatatacaagctatgt |
1613 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 267 - 323
Target Start/End: Original strand, 21808 - 21864
Alignment:
| Q |
267 |
ttttattcacattagcaatgaaattggatttacatcatacttatatacatgctatgt |
323 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
21808 |
ttttattcacattagcaatgaaattgggtttacatcatacttatatacaagctatgt |
21864 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 219 - 323
Target Start/End: Complemental strand, 24651002 - 24650898
Alignment:
| Q |
219 |
attgagaattgagagaaaataagagaaagttcttattgattgaaaactttttattcacattagcaatgaaattggatttacatcatacttatatacatgc |
318 |
Q |
| |
|
||||||||||| || | || ||||||||||| ||||||||| |||||| |||||| |||||| |||||| || ||||||| || |||||||||| || |
|
|
| T |
24651002 |
attgagaattgggaaagaagaagagaaagtttgtattgattgtaaacttattattctcattagttatgaaaatgtgtttacataatccttatatacaagc |
24650903 |
T |
|
| Q |
319 |
tatgt |
323 |
Q |
| |
|
||||| |
|
|
| T |
24650902 |
tatgt |
24650898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 311
Target Start/End: Complemental strand, 19510372 - 19510271
Alignment:
| Q |
213 |
gagagaattgagaattgagagaaaataaga---gaaagttcttattgattgaaaactttttattcacattagcaatgaaattggatttacatcatactta |
309 |
Q |
| |
|
||||||||||||||| ||||||||| |||| |||||| ||| ||||||| |||||| | |||| |||||||||||||| | | |||||| |||| ||| |
|
|
| T |
19510372 |
gagagaattgagaatcgagagaaaaaaagaagagaaagtacttgttgattgtaaacttatgattctcattagcaatgaaacttggtttacaccatattta |
19510273 |
T |
|
| Q |
310 |
ta |
311 |
Q |
| |
|
|| |
|
|
| T |
19510272 |
ta |
19510271 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 252 - 315
Target Start/End: Original strand, 17506994 - 17507057
Alignment:
| Q |
252 |
tattgattgaaaactttttattcacattagcaatgaaattggatttacatcatacttatataca |
315 |
Q |
| |
|
||||||||| |||||| ||||| ||||| |||||||| || ||||||||||||||||||||| |
|
|
| T |
17506994 |
tattgattgtaaacttgttattatcattatcaatgaaagtgtgtttacatcatacttatataca |
17507057 |
T |
|
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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 315
Target Start/End: Original strand, 54766 - 54869
Alignment:
| Q |
212 |
agagagaattgagaa-ttgagagaaaataagagaaagttcttattgattgaaaactttttattcacattagcaatgaaattggatttacatcatacttat |
310 |
Q |
| |
|
||||| ||||||||| |||||||| || ||||||| | || |||||||| |||||| |||||| |||||| ||||||| | |||||||||||||||| |
|
|
| T |
54766 |
agagacaattgagaaattgagagagaagaagagaatgaact-attgattgtaaacttgttattctcattaggaatgaaagtatgtttacatcatacttat |
54864 |
T |
|
| Q |
311 |
ataca |
315 |
Q |
| |
|
|||| |
|
|
| T |
54865 |
ttaca |
54869 |
T |
|
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