View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20327_low_24 (Length: 325)
Name: NF20327_low_24
Description: NF20327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20327_low_24 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 11 - 306
Target Start/End: Original strand, 37102609 - 37102904
Alignment:
| Q |
11 |
gaagaatattcatagaatcaaattaaaagtagcataaatgtacctgaaatcaactgaaattaggtcccttaatatagttgtgatggcttgagatcaatat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37102609 |
gaagaatattcatagaatcaaattaaaagtagcataaatgtacctgaaatcaacagaaattaggtcccttaatatagttgtgatggcttgagatcaatat |
37102708 |
T |
|
| Q |
111 |
atggaagggacactgcactttgatgcttcaaaccaaggtaatatttccttcaaagatgttaaatttcagcattaatttctacaatcaaagactctctatg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37102709 |
atggaagggacactgcactttgatgcttcaaaccaaggtaatatttccttcaaagatgttaaatttcagcattaatttctacaatcaaagactctctatg |
37102808 |
T |
|
| Q |
211 |
aacaataacctaaaccaaaccaatttaaatcatcaaataaaattgtgtcactttggttgttctagagatatttaagaattgagatcatgaaaggag |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37102809 |
aacaataacctaaaccaaaccaatttaaatcatcaaataaaattgtgtcactttggttgttctagagatatttaagaattgagatcatgaaaggag |
37102904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 1951635 - 1951586
Alignment:
| Q |
15 |
aatattcatagaatcaaattaaaagtagcataaatgtacctgaaatcaac |
64 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1951635 |
aatattcagaaaatcaaattaaaagtagcataaatgtacatgaaatcaac |
1951586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University