View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20327_low_26 (Length: 251)
Name: NF20327_low_26
Description: NF20327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20327_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 10248832 - 10249057
Alignment:
| Q |
11 |
cagagagaagcaaaaagaagggtgaagaaagagagttatgaggttggaattattcaagttaagaatagtgagaatgttaatgatgatgatgaggaacata |
110 |
Q |
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| T |
10248832 |
cagaaagaagcaaaaagaagggtgaagaaagagagttatgaggttggaattattcaagttaagaatagtgagaatgttaatgatgatgatgaggaacata |
10248931 |
T |
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| Q |
111 |
ttccaaatgcaagaaggtgcactcattgtttgtcacaaaggaccccacaatggagggcaggaccattgggaccaaaaacactatgcaatgcatgtggtgt |
210 |
Q |
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| T |
10248932 |
ttccaaatgcaagaaggtgcactcattgtttgtcacaaaggaccccacaatggagggcaggaccattgggaccaaaaacactatgcaatgcatgtggtgt |
10249031 |
T |
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| Q |
211 |
gaggtacaagtctggtaggttgttgc |
236 |
Q |
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| T |
10249032 |
gaggtacaagtctggtaggttgttgc |
10249057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 120 - 236
Target Start/End: Complemental strand, 33075266 - 33075150
Alignment:
| Q |
120 |
caagaaggtgcactcattgtttgtcacaaaggaccccacaatggagggcaggaccattgggaccaaaaacactatgcaatgcatgtggtgtgaggtacaa |
219 |
Q |
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| T |
33075266 |
caaggaggtgtacacattgtttgtcacaaaggaccccacaatggagggcaggcccattaggcccaaagacactatgcaatgcatgtggtgtgaggtacaa |
33075167 |
T |
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| Q |
220 |
gtctggtaggttgttgc |
236 |
Q |
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| T |
33075166 |
atctggtaggttgttgc |
33075150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 42714522 - 42714592
Alignment:
| Q |
155 |
ccacaatggagggcaggaccattgggaccaaaaacactatgcaatgcatgtggtgtgaggtacaagtctgg |
225 |
Q |
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| T |
42714522 |
ccacaatggagggcaggtccaatggggccaaaaacactctgcaatgcttgcggtgttcggtacaagtctgg |
42714592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 4315097 - 4315033
Alignment:
| Q |
168 |
caggaccattgggaccaaaaacactatgcaatgcatgtggtgtgaggtacaagtctggtaggttg |
232 |
Q |
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| T |
4315097 |
caggaccgatgggaccgaaaacactatgcaatgcttgtggtgtgaggtttaagtccggtaggttg |
4315033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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