View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20327_low_3 (Length: 618)
Name: NF20327_low_3
Description: NF20327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20327_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 542; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 13 - 603
Target Start/End: Original strand, 42743404 - 42744010
Alignment:
| Q |
13 |
aatatatttaactaaactctaagataaataagttgttattttcttaaaaatactaaggatcgcattgctactattaccataatttaaaaaatcttgattg |
112 |
Q |
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| T |
42743404 |
aatatatttaactaaactctaagataaataagttgttattttctcaaaaatactaaggatcgcattgctactattaccataatttaaaaaatcttgattg |
42743503 |
T |
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| Q |
113 |
caagttaaaaactaaacacttcaattaaacaacaaaaatgaaatag----------------attatacttcctccataggatcctccaaacacaacaac |
196 |
Q |
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| T |
42743504 |
caagttaaaaactaaacacttcaattaaacaacaaaaatgaaatagaattttgataatatagattatacttcctccataggatcctccaaacacaacaac |
42743603 |
T |
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| Q |
197 |
aggggactcagttgctgacaaatttttcttgaggtcaatgataagagtggcataatcagccaaagcttgtgcagaactaagatatccaagtgtactgcta |
296 |
Q |
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| T |
42743604 |
aggggactcagttgctgacaaatttttcttgaggtcaatgataagagtggcataatcagccaaagcttgtgcagaactaagatatccaagtgtactgcta |
42743703 |
T |
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| Q |
297 |
tttgcatatgcaaccttcttcttgcctccaaatggaattgattttccatagaatctatgctgcatttcaatttctaatgcataagataaacatatataat |
396 |
Q |
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| T |
42743704 |
tttgcatatgcaaccttcttcttgcctccaaatggaattgattttccatagaatctatgctgcatttcaatttctaatgcataagataaacatatataat |
42743803 |
T |
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| Q |
397 |
tcaaatttaatttcaaatcattaaatacatatttgagttgatggtgagtttaacgaaatcaactgcgattttgttgtcaatttcaccgttaatccagaca |
496 |
Q |
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| T |
42743804 |
tcaaatttaatttcaaatcattaaatacatatttgagttgatggtgagtttaacgaaatcaactgcgattttgttgtcaatttcaacgttaatccagaca |
42743903 |
T |
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| Q |
497 |
tgtactaaaatgttttctaggatatgagacaaaaagacaatgcagaagaggtagagaatccaagacaataaagtttacctcaataaaaaccaaaagggca |
596 |
Q |
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| T |
42743904 |
tgtactaaaatgttgtctaggatatgagacaaaaagacaatgcagaagaggtagagaatccaagacaataaagtttacctcaataaaaaccaaaagggca |
42744003 |
T |
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| Q |
597 |
ttgaaat |
603 |
Q |
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||||||| |
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| T |
42744004 |
ttgaaat |
42744010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 161 - 360
Target Start/End: Original strand, 42748045 - 42748244
Alignment:
| Q |
161 |
tatacttcctccataggatcctccaaacacaacaacaggggactcagttgctgacaaatttttcttgaggtcaatgataagagtggcataatcagccaaa |
260 |
Q |
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| T |
42748045 |
tatacttccaccataggatcctccaaacacgacaacaggggaatcagttgctgataaattcttcttcagatcaattatgagtgtggcataatcagctaaa |
42748144 |
T |
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| Q |
261 |
gcttgtgcagaactaagatatccaagtgtactgctatttgcatatgcaaccttcttc-ttgcctccaaatggaattgattttccatagaatctatgctgc |
359 |
Q |
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| T |
42748145 |
gcctgtgtggaactcatatatccaagtgtgctgctagttttatttgcaa-cttcatcatttcctccaaatggtattgattttccatagtatctatgctgc |
42748243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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