View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20327_low_30 (Length: 244)
Name: NF20327_low_30
Description: NF20327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20327_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 10 - 225
Target Start/End: Original strand, 31701148 - 31701365
Alignment:
| Q |
10 |
agagagaagaaaaacaaaataaatgtaaaatataagcatatgtaaagaaagatggccaagaagtaagacagaaaaaagggagt--gtgagacacataatg |
107 |
Q |
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| T |
31701148 |
agagagaagaaaaacaaaataaatgtaaaatataagcatatgtaaagaaagatggccaagaagtaagacagaaaagagggagtacgttagacacataatg |
31701247 |
T |
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| Q |
108 |
agaagttagaagatgaacattgccttgctactgtacaagaaattctcttaatcaaacctttagatttcattcagacgtgttaagtcggcgtttacacaac |
207 |
Q |
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| T |
31701248 |
agaagttagaagatgaacattgccttgccactgtacaagaaattctcttaatcaaacctgtagatttcattcagacgtgttaagtcggcgtttacacaac |
31701347 |
T |
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| Q |
208 |
aaaccgtgtggttcatgt |
225 |
Q |
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| T |
31701348 |
aaaccgtgtggttcatgt |
31701365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 10 - 192
Target Start/End: Original strand, 30234616 - 30234797
Alignment:
| Q |
10 |
agagagaagaaaaacaaaataaatgtaaaatataagcatatgtaaagaaagatggccaagaagtaagacagaaaaaagggagtgtgagacacataatgag |
109 |
Q |
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|||||||||||||| |||||||||||||||| ||| ||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| || |
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| T |
30234616 |
agagagaagaaaaataaaataaatgtaaaatgtaatcatttgtaaagaaagatggccaagaggtaagacagaaaagagggagtgtgagacacataataag |
30234715 |
T |
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| Q |
110 |
aagttagaagatgaacattgccttgctactgtacaagaaattctcttaatcaaacctttagatttcattcagacgtgttaagt |
192 |
Q |
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| T |
30234716 |
aagttagaagatgaacattgccttgccactatac-agaaattctctgaatcaaacctgtaaattttattcagacatgttaagt |
30234797 |
T |
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