View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20327_low_36 (Length: 203)
Name: NF20327_low_36
Description: NF20327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20327_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 9 - 179
Target Start/End: Complemental strand, 23110198 - 23110026
Alignment:
| Q |
9 |
agagatgaaaagtaaaatcacaagagggttagacaatttcggaaagttcaaggtagagaagttatttataaggagagaga--agagttgagtgtgtgagt |
106 |
Q |
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| T |
23110198 |
agagatgaaaagtaaaatcacaagagggttagacaattttggaaagttcaaggtagagaagttatttataaggagagagagaagagttgagtgtgtgagt |
23110099 |
T |
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| Q |
107 |
ggaagagtttttgggcatgtgagtgtgttcataagtctcaaaacatgtcaatatctcaacccccaacgaacct |
179 |
Q |
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| T |
23110098 |
ggaagagtttttgggcatgtgagtgtgttcataagtctcaaaacatgtcaatatctcaacccccaacgaacct |
23110026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 73 - 165
Target Start/End: Original strand, 23078835 - 23078923
Alignment:
| Q |
73 |
tttataaggagagagaagagttgagtgtgtgagtggaagagtttttgggcatgtgagtgtgttcataagtctcaaaacatgtcaatatctcaa |
165 |
Q |
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| T |
23078835 |
tttataaagaaagaaaagagttgtgtgtgtgagtgaaagagtttttgtgcatgtga--ctgttcatgagtct--gaacatgtcaatatctcaa |
23078923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 23074228 - 23074298
Alignment:
| Q |
73 |
tttataaggagagagaagagttgagtgtgtgagtg-gaagagtttttgggcatgtgagtgtgttcataagt |
142 |
Q |
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||||||||| | ||||| ||||||||||||| ||| ||| ||||||||||||| | | ||||||||||||| |
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| T |
23074228 |
tttataaggggggagaaaagttgagtgtgtgggtgagaacagtttttgggcatttaaatgtgttcataagt |
23074298 |
T |
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