View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20327_low_5 (Length: 578)
Name: NF20327_low_5
Description: NF20327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20327_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 303 - 565
Target Start/End: Complemental strand, 7679112 - 7678860
Alignment:
| Q |
303 |
gtggataacatagttgcttaaatagcttctagattactaaattaatgcatgcgctgattgcttgttagacaagttttttactctttagacatgattttgt |
402 |
Q |
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| T |
7679112 |
gtggataacatagttgcttaaatagcctctagatcactaaattaatgcatgcgctgattgcttgttagacaaattttttactctttagacatggttttgt |
7679013 |
T |
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| Q |
403 |
acgatttgaatacaaactaattattattattattagatgaaaaaattagcccacatcatcagctatgtgtgagacagacaatacaagaagggagattatt |
502 |
Q |
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| T |
7679012 |
acgatttaaatacaaactaattatt------attagatgaaaaaattagcccgcatcatcagctatgtgtg----agacaatacaagaagggagattaat |
7678923 |
T |
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| Q |
503 |
attactgtaacaatgacaaacaatgcttccccagtatgagggaaaatgttcttgactagtttc |
565 |
Q |
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| T |
7678922 |
attactgtaacaatgaccaacaatgcttccccagtatgagggacaatgttcttgactagtttc |
7678860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 7679430 - 7679342
Alignment:
| Q |
17 |
aaagggtttatgcaattaatttattttttgggggagtcaagttcttggcatttagaagtggcggatagcgatgtggacaagtatgatta |
105 |
Q |
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| T |
7679430 |
aaagggtttatgcaattaatttattttttggggcagtcaagttcttggcaattaggagtggcggatagcgatgtggacgagtatgatta |
7679342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 230
Target Start/End: Complemental strand, 7679220 - 7679191
Alignment:
| Q |
201 |
tttgagatattataatgtgtttttgttgct |
230 |
Q |
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| T |
7679220 |
tttgagatattataatgtgtttttgttgct |
7679191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 80 - 140
Target Start/End: Complemental strand, 43003222 - 43003160
Alignment:
| Q |
80 |
gatagcgatgtggacaagtatgatta--atgatgatggcatgtggtatcatgaaggaagggtt |
140 |
Q |
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| T |
43003222 |
gatagcgatgtggacgagtataattacaatgatgatggcatgtggttttatgaaggaagggtt |
43003160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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