View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20327_low_6 (Length: 543)
Name: NF20327_low_6
Description: NF20327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20327_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 16 - 536
Target Start/End: Complemental strand, 39835003 - 39834490
Alignment:
| Q |
16 |
caaattcaatgcccaaagaaaacttataagtacatagctttggttaatatatacattatacagtgataaattaatctcttttcatatcaataatcctgca |
115 |
Q |
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| T |
39835003 |
caaattcaatgcccagagaaaacttataagtac-tagctttggttaatatatacattatacagtgataacttaatctcttttcatatcaataatcctgca |
39834905 |
T |
|
| Q |
116 |
tccgccttgcatgtgaatgtacctaaattactaattagaatttgatggtcataaagatagtataacatgtgaaatgtgaatgtacctannnnnnnngcat |
215 |
Q |
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| T |
39834904 |
tccgccttgcatgtgaatgtacctaaattactaattagaatttgatggtcataaagatagtataacaggtgaa-------tgtacctattttttttgcat |
39834812 |
T |
|
| Q |
216 |
catgcaaaatacattagtttagttagtataagtgttaaagtttcacactacatcatcttttttaaaccaa-gcatagaagagggaataatgttatatcgc |
314 |
Q |
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| T |
39834811 |
catgcaaaatacattagtttagttagtataagtgttaaagtttcacactatatcatcttttttaaacgaaagcatagaagagggaataatgttatatcgc |
39834712 |
T |
|
| Q |
315 |
aaacaattcaataaacagcaagcaacatagtatatccgagcctgcaatgccactcctcccctcccactcaaggaatcaaagctgacttgtcatcttagca |
414 |
Q |
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| T |
39834711 |
aaacaattcaataaacagcaagcaacatagtatatccgagcctgcaatgccactcctcccctcccactcaaggaatcaaagctgacttgtcatcttagca |
39834612 |
T |
|
| Q |
415 |
tcaataatattaattgatgatttatttaaatcttaagatagcaattaacacctttagttaaccatgaagcccacttaagtcattttataattgtattaac |
514 |
Q |
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| T |
39834611 |
tcaataatattagttgatgatttatttaaatcttaagatagcaattaacacctttagttaaccatgaagcccacttaagtcattttataattgtattaac |
39834512 |
T |
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| Q |
515 |
atgatccacttcttctgtgctc |
536 |
Q |
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| T |
39834511 |
acgatccacttcttctgtgctc |
39834490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 389 - 515
Target Start/End: Complemental strand, 39824314 - 39824186
Alignment:
| Q |
389 |
atcaaagctgacttgtcatcttagcatcaataatattaattgatgatttatttaaatcttaagatagcaattaacacctttagttaacc---atgaagcc |
485 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| | | ||| || ||||||||||| |||||||| |||||| |||||||| |
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| T |
39824314 |
atcaaagctgacttgtcatcttagcatcaataatattaattaatgatttctat-aatgttgggatagcaattagcacctttaattaaccatgatgaagcc |
39824216 |
T |
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| Q |
486 |
cacttaagtcattttataattgtattaaca |
515 |
Q |
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| T |
39824215 |
cacttcagtcattttataattgtattaaca |
39824186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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