View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20328_high_11 (Length: 365)
Name: NF20328_high_11
Description: NF20328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20328_high_11 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 6 - 365
Target Start/End: Original strand, 31810232 - 31810591
Alignment:
| Q |
6 |
agaagcaaagggctatgatgtaaatgaggcagggttttggtactgtagaaaaataggatcaaagaaaatgtgttatgaaaagaggacaccccttatgatt |
105 |
Q |
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| T |
31810232 |
agaagaaaagggctatgatgtaaatgaggcagggttttggtactgtagaaaaataggatcaaagaaaatgtgttatgaaaagagaacaccccttatgatt |
31810331 |
T |
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| Q |
106 |
gcttctttgtttggaagcattagggtggtcaaatatatcattgaaacaaacatggttaatgtgaacatggcaattggtagtgaaaatgtcactgcattac |
205 |
Q |
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| T |
31810332 |
gcttctttgtttggaagcattagggtggtcaaatatatcattgaaacaaacatggttaatgtgaacatggcaattggtagtgaaaatgtcactgcattac |
31810431 |
T |
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| Q |
206 |
attgtgctgttgctggtggctctaaatccaaatttgagattgttaagctcttgcttgatgctggtgcagatgttgatttccttgatgaagtagttaggca |
305 |
Q |
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| T |
31810432 |
attgtgctgttgctggtggctctaaatccaaatttgagattgttaagctcttgcttgatgctggtgcagatgttgatttccttgatgaagtagttaggca |
31810531 |
T |
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| Q |
306 |
gaaactttcagtggctaattcaaaagaattagtagctgagaagaaagattcaggatatgc |
365 |
Q |
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| T |
31810532 |
gaaactttcagtggctaattcaaaagaattagtagctgagaagaaagattcaggatatgc |
31810591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 61 - 124
Target Start/End: Original strand, 25817828 - 25817891
Alignment:
| Q |
61 |
ggatcaaagaaaatgtgttatgaaaagaggacaccccttatgattgcttctttgtttggaagca |
124 |
Q |
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| T |
25817828 |
ggatcaaaggaaatgagttatgaagaaaggacccctcttatgattgctgccttgtttggaagca |
25817891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 135
Target Start/End: Original strand, 35643152 - 35643265
Alignment:
| Q |
22 |
gatgtaaatgaggcagggttttggtactgtagaaaaataggatcaaagaaaatgtgttatgaaaagaggacaccccttatgattgcttctttgtttggaa |
121 |
Q |
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| T |
35643152 |
gatgtgaatgaggaaggcttttggtatggtagaagaattggatcgaagaagatggaatccgaaaagaggactcctcttatgattgcttccatgtttggaa |
35643251 |
T |
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| Q |
122 |
gcattagggtggtc |
135 |
Q |
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| T |
35643252 |
gcactagagtggtc |
35643265 |
T |
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