View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20328_high_12 (Length: 364)
Name: NF20328_high_12
Description: NF20328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20328_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 5 - 329
Target Start/End: Original strand, 37990142 - 37990467
Alignment:
| Q |
5 |
tattgagtaaaaacctattttagtcc-tcgcaatttcttcacgacctaattcagtctccaacaaaaataaaatttaaattgatccttgatattttcatat |
103 |
Q |
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| T |
37990142 |
tattgagtaaaaacctattttagtccctcgcaatttcttcacggcctaattcagtctccgacaaaaataaaatttaaattgatccctgatattttcatat |
37990241 |
T |
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| Q |
104 |
tatgaacaaattaatccctgattcatcataatagagtgactaatttgtctccgatataaaaatatcagggaccaatttagattttatttttgttgaagac |
203 |
Q |
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| T |
37990242 |
tatgaacaaattagtccctgatttatcataatagagtgattaatttatctccgataaaaaaatatcagggatcaatttaggttttatttttgtcgaagac |
37990341 |
T |
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| Q |
204 |
taaattggattgtcagaaaattacgagagagcaaaatgagtcttcactctaaaatgttactatcagctcagtactctaaaagagttctaatcaagagtac |
303 |
Q |
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| T |
37990342 |
taaattggactgtcagaaaattatgagagagcaaaatgagtcttcactctaatatgttactatcagctcaatactctaaaagagttctaatcaagagtac |
37990441 |
T |
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| Q |
304 |
tctagtttctctttttcattttatga |
329 |
Q |
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| T |
37990442 |
tctagtttctctttttcattttatga |
37990467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 118
Target Start/End: Original strand, 3411465 - 3411516
Alignment:
| Q |
67 |
aaaataaaatttaaattgatccttgatattttcatattatgaacaaattaat |
118 |
Q |
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| T |
3411465 |
aaaataaaactcaaattaatccatgttattttcatattatgaacaaattaat |
3411516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 37990241 - 37990189
Alignment:
| Q |
157 |
atataaaaatatcagggaccaatttagattttatttttgttgaagactaaatt |
209 |
Q |
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| T |
37990241 |
atatgaaaatatcagggatcaatttaaattttatttttgtcggagactgaatt |
37990189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 34159609 - 34159665
Alignment:
| Q |
49 |
ctaattcagtctccaacaaaaataaaatttaaattgatccttgatattttcatatta |
105 |
Q |
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|||||| | |||| || |||||||||||||||| | |||| |||||||||||||||| |
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| T |
34159609 |
ctaatttattctctaagaaaaataaaatttaaaataatccatgatattttcatatta |
34159665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 194
Target Start/End: Original strand, 39859025 - 39859109
Alignment:
| Q |
111 |
aaattaatccctgattcatcataatagagtgactaatttgtctccgatataaaaatatcagggac-caatttagattttattttt |
194 |
Q |
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| T |
39859025 |
aaattagtcactgattcattatagcatagggactaatttgtccccaatataaaaatgtcagggactcattttaaattttattttt |
39859109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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