View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20328_high_14 (Length: 354)
Name: NF20328_high_14
Description: NF20328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20328_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 56275752 - 56276095
Alignment:
| Q |
1 |
cctaaaaaatacattaattgtcaatagtcttaagtttactttcactagacattttgcattatcatattgtaatcgttagttttgctcta--aaagaa-cg |
97 |
Q |
| |
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||||||||||||||||||||||||| |||||||| |||||||||| |||||||| |||||||||||||||||||||| |||||||| | |||||| || |
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| T |
56275752 |
cctaaaaaatacattaattgtcaatggtcttaaggttactttcaccggacattttacattatcatattgtaatcgttacttttgctccagaaaagaagcg |
56275851 |
T |
|
| Q |
98 |
taacatgataggagtttgttagtgtattcaaaagaaaggatatagttttttgtaaagttataatttggtacgtacaagtcataaaacaaactctctagaa |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56275852 |
taacatgataggagtttgttagtgtattcaaaagaaaggatatagttttttgtaaagttataatttggtacgtacaagtcataaaacaaactctctagaa |
56275951 |
T |
|
| Q |
198 |
aatgaatttaatatctgtaacaacctactctagttcacaaagcacacgaaatctcaagaacgagaagactatacacgacaagttatacacttatttgact |
297 |
Q |
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||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56275952 |
aattaatttaatatctataacaacctactctagttcacaaagcacacgaaatctcaagaacgagaagactatacacgacaagttatacacttatttgact |
56276051 |
T |
|
| Q |
298 |
tgattggagatatttggtaaaaacttatctcaccaacttatatt |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56276052 |
tgattggagatatttggtaaaaacttatctcaccaacttatatt |
56276095 |
T |
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