View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20328_high_17 (Length: 286)

Name: NF20328_high_17
Description: NF20328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20328_high_17
NF20328_high_17
[»] chr1 (1 HSPs)
chr1 (1-286)||(14786983-14787270)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 14787270 - 14786983
Alignment:
Q  1 atataaact-atatttaacacatcccatatttatatatccagtnnnnnnnn-ctcatatttaaacacattcagaagtgtttgattgtgacccaatttgaa 98  Q
    ||||||||| |||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||| |||||||||    
T  14787270 atataaacttatatttaacacatcccatatttatatatccagtaaaaaaaaactcatatttaaacacattcagaagtgtttgattgtgacgcaatttgaa 14787171  T
Q  99 ttattttgtaacttatgtaaaagtttaatcaaagtatattttaaatttattgtaagcatgtaccgttaatgaaatatttttatacatttatccaatcatt 198  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  14787170 ttattttgtaacttatgtaaaagtttaatcaaagtaggttttaaatttattgtaagcatgtaccgttaattaaatatttttatacatttatccaaccatt 14787071  T
Q  199 tgttatcgtgtaatgttttttacgacattttagcgtcataaaagattcattatagtatggtttgattgaatgtatatatgtttaaaca 286  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14787070 tgttatcgtgtaatgttttttacgatattttagcgtcataaaagattcattatagtatggtttgattgaatgtatatatgtttaaaca 14786983  T

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