View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20328_high_23 (Length: 246)

Name: NF20328_high_23
Description: NF20328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20328_high_23
NF20328_high_23
[»] chr3 (4 HSPs)
chr3 (16-228)||(11343680-11343897)
chr3 (113-207)||(6162663-6162760)
chr3 (115-160)||(50663926-50663970)
chr3 (167-207)||(3860246-3860286)
[»] chr1 (1 HSPs)
chr1 (69-149)||(17696231-17696311)
[»] chr2 (3 HSPs)
chr2 (69-164)||(11573680-11573774)
chr2 (165-209)||(20685004-20685048)
chr2 (118-207)||(37892994-37893086)
[»] chr7 (2 HSPs)
chr7 (69-144)||(13552777-13552852)
chr7 (73-141)||(5729048-5729116)
[»] chr4 (3 HSPs)
chr4 (16-144)||(38677542-38677674)
chr4 (82-142)||(9765399-9765459)
chr4 (119-207)||(33164492-33164583)


Alignment Details
Target: chr3 (Bit Score: 149; Significance: 8e-79; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 11343680 - 11343897
Alignment:
Q  16 ataggtgtagttgttggaggctgatggtgaaaagaagagaaatgctgcatgagt-aactcacgctgcgtgacttaagttacgctaacattataactgaca 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||  |    
T  11343680 ataggtgtagttgttggaggctgatggtgaaaagaagagaaatgctgcgtgagttaactcacgctgcgtgacttaagttacgctaacattataactggta 11343779  T
Q  115 tgagttaagtcacgctacgtgagttaacatacgtatggggcatttttgac----actttgagaatgagcggaaccattgggataattaacagaattcttg 210  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||    ||||||||| |||||||||||||| | ||||| | |||||||||||    
T  11343780 tgagttaagtcacgctacctgagttaacatgcgtatggggcatttttgacttttactttgagagtgagcggaaccatttgaataatgagcagaattcttg 11343879  T
Q  211 tgatattgtgacgttatt 228  Q
    ||||||| ||||||||||    
T  11343880 tgatattttgacgttatt 11343897  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 207
Target Start/End: Original strand, 6162663 - 6162760
Alignment:
Q  113 catgagttaagtcacgctacgtgagttaacatacgtatggggcatttttgac----actttgagaatgagcggaaccattgggataattaacagaattc 207  Q
    ||||| |||||||||||||||   |||||||| |||| |||||||||| |||    |||||| ||||||||||||||||| || |||| | ||||||||    
T  6162663 catgacttaagtcacgctacgcatgttaacatgcgta-ggggcattttggacttttactttgggaatgagcggaaccatttgggtaatgagcagaattc 6162760  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 50663970 - 50663926
Alignment:
Q  115 tgagttaagtcacgctacgtgagttaacatacgtatggggcatttt 160  Q
    |||||||| ||||||||||||||||||||| |||| ||||||||||    
T  50663970 tgagttaactcacgctacgtgagttaacatgcgta-ggggcatttt 50663926  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 3860286 - 3860246
Alignment:
Q  167 tttgagaatgagcggaaccattgggataattaacagaattc 207  Q
    |||||||||||||| ||||||| ||||||| ||||||||||    
T  3860286 tttgagaatgagcgaaaccatttggataatgaacagaattc 3860246  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 17696311 - 17696231
Alignment:
Q  69 taactcacgctgcgtgacttaagttacgctaacattataactgacatgagttaagtcacgctacgtgagttaacatacgta 149  Q
    ||||||||| ||| |||||||||| ||||||   |||||||||||||||||||| ||||||||||||||||||||| ||||    
T  17696311 taactcacgttgcatgacttaagtcacgctactcttataactgacatgagttaactcacgctacgtgagttaacatgcgta 17696231  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 69 - 164
Target Start/End: Complemental strand, 11573774 - 11573680
Alignment:
Q  69 taactcacgctgcgtgacttaagttacgctaacattataactgacatgagttaagtcacgctacgtgagttaacatacgtatggggcatttttgac 164  Q
    |||||||||||||||||||||||||||| |  | ||||||||  ||   ||||| ||||||||||  |||||||||||||| ||||||||||||||    
T  11573774 taactcacgctgcgtgacttaagttacgttctccttataactagcacatgttaactcacgctacgcaagttaacatacgta-ggggcatttttgac 11573680  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 20685048 - 20685004
Alignment:
Q  165 actttgagaatgagcggaaccattgggataattaacagaattctt 209  Q
    |||||||||||||||||||||||| || |||| | ||||||||||    
T  20685048 actttgagaatgagcggaaccatttgggtaatgagcagaattctt 20685004  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 207
Target Start/End: Original strand, 37892994 - 37893086
Alignment:
Q  118 gttaagtcacgctacgtgagttaacatacgtatggggcatttttgac----actttgagaatgagcggaaccattgggataattaacagaattc 207  Q
    ||||| ||||||||||| ||||||||| | || |||||||||| |||    |||||| ||||||||| ||||||| || |||||| ||||||||    
T  37892994 gttaactcacgctacgtaagttaacatgcata-ggggcattttggacttttactttgggaatgagcgaaaccatttgggtaattagcagaattc 37893086  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 144
Target Start/End: Complemental strand, 13552852 - 13552777
Alignment:
Q  69 taactcacgctgcgtgacttaagttacgctaacattataactgacatgagttaagtcacgctacgtgagttaacat 144  Q
    |||||||||||||||||||||||| ||  |||||| |||| ||   |||||||| ||| |||||||||||||||||    
T  13552852 taactcacgctgcgtgacttaagtcacattaacatcataattggtgtgagttaactcaagctacgtgagttaacat 13552777  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 141
Target Start/End: Original strand, 5729048 - 5729116
Alignment:
Q  73 tcacgctgcgtgacttaagttacgctaacattataactgacatgagttaagtcacgctacgtgagttaa 141  Q
    |||||||||||||||||||| ||| |    |||||||||| ||||||||| ||||| ||||||| ||||    
T  5729048 tcacgctgcgtgacttaagtcacgtttctcttataactgatatgagttaactcacgttacgtgaattaa 5729116  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 144
Target Start/End: Original strand, 38677542 - 38677674
Alignment:
Q  16 ataggtgtagttgttggaggctgatggtgaaaagaagagaaatg---ctg-catgagt-aactcacgctgcgtgacttaagttacgctaacattataact 110  Q
    |||||||||||||||||  ||||||||| ||||||||||||||    ||  | ||||| |||||||| |||||||||||||| || ||||||| || |||    
T  38677542 ataggtgtagttgttggtagctgatggtaaaaagaagagaaatctaactaacgtgagttaactcacgttgcgtgacttaagtcacactaacatcat-act 38677640  T
Q  111 gacatgagttaagtcacgctacgtgagttaacat 144  Q
    | | |||| ||| ||||||||||| |||||||||    
T  38677641 ggcgtgagataattcacgctacgtaagttaacat 38677674  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 142
Target Start/End: Complemental strand, 9765459 - 9765399
Alignment:
Q  82 gtgacttaagttacgctaacattataactgacatgagttaagtcacgctacgtgagttaac 142  Q
    |||| |||||| |||||||||| ||||||||||| |||||| |||||||| |||| |||||    
T  9765459 gtgatttaagtcacgctaacatcataactgacataagttaactcacgctatgtgacttaac 9765399  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 207
Target Start/End: Original strand, 33164492 - 33164583
Alignment:
Q  119 ttaagtcacgctacgtgagttaacatacgtatggggcatttttgaca----ctttgagaatgagcggaaccattgggataattaacagaattc 207  Q
    |||||||||||||||   |||||||| |||| |||||||||| ||||    ||||||||||||||||||||||| || |||| | ||||||||    
T  33164492 ttaagtcacgctacgcatgttaacatgcgta-ggggcattttggacatttactttgagaatgagcggaaccatttgggtaatgagcagaattc 33164583  T

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