View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20328_high_27 (Length: 231)
Name: NF20328_high_27
Description: NF20328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20328_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 11343647 - 11343422
Alignment:
| Q |
1 |
gtttttcatccacttataatatctctcaaattattgccttgtcctttccttctctcttccataattccttctctcaaattatagaatgttgttgagtttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
11343647 |
gtttttcatccacttataatatctctcaaattattggcttgtcctttccttctctcttccataattccttctctcaaattatagaatgatgttgagtttt |
11343548 |
T |
|
| Q |
101 |
aacaatcggagttgagtcttaaaattattaattttgataacaaattaagtatgaaagagatgagatgcaaaaatctatgaaattgaagcttcgaagttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
11343547 |
aacaatcggagttgagtcttaaaattattaattttgataacaaattaagtatgaaagagatgagatgcaaaaatctatgaaattgaagcttctaagttgt |
11343448 |
T |
|
| Q |
201 |
taaattattgtttattcttactattt |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
11343447 |
taaattattgtttattcttactattt |
11343422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 38677515 - 38677291
Alignment:
| Q |
1 |
gtttttcatccacttataatatctctcaaattattgccttgtcctttccttctctcttccataattccttctctcaaattatagaatgttgttgagtttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38677515 |
gtttttcatccacttataatatctctcaaattattggcttgtcctttccttctctcttccataattccttctctcaaattatagaatgttgttgagtttt |
38677416 |
T |
|
| Q |
101 |
aacaatcggagttgagtcttaaaattattaattttgataacaaattaagtatgaaagagatgagatgcaaaaatctatgaaattgaagcttcgaagttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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|
| T |
38677415 |
aacaatcggagttgagtcttaaaattattaattttgataacaaattaagtatgaaagagatgagatgcaaaaatctatgaaattgaagcttctaaattgt |
38677316 |
T |
|
| Q |
201 |
taaattattgtttattcttactatt |
225 |
Q |
| |
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||||||||| |||||||||| |||| |
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|
| T |
38677315 |
taaattattatttattcttattatt |
38677291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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