View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20328_high_28 (Length: 221)
Name: NF20328_high_28
Description: NF20328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20328_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 45745054 - 45745217
Alignment:
| Q |
1 |
aaagatctaaacaaatcacacacaaaaataaccacaatggcttggcttgctagatggatcacatcatgtttcttgccatgcaagcttccttcaagtatat |
100 |
Q |
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| T |
45745054 |
aaagatctaaacaaaacacacacaaaaataaccacaatggcttggcttgctagatggatcacatcatgtttcttgccatgcaggcttccttcaagtatat |
45745153 |
T |
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| Q |
101 |
atgttttgtcnnnnnnnctttcttgattactatttagttaatcaacgtcacatctaaagtacat |
164 |
Q |
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| T |
45745154 |
atgttttgtctttttttctttcttgattactatttagttaatcaacgtcacatctaaagtacat |
45745217 |
T |
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Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 45734167 - 45734264
Alignment:
| Q |
1 |
aaagatctaaacaaatcacacacaaaaataaccacaatggcttggcttgctagatggatcacatcatgtttcttgccatgcaagcttccttcaagtat |
98 |
Q |
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||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
45734167 |
aaagagctaaacaaatcacacataaaaataagcacaatggcttggcttgctagatggatcacatcatgtttcttgctatgcaggcttccttcaagtat |
45734264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 205
Target Start/End: Original strand, 45745241 - 45745271
Alignment:
| Q |
175 |
ggttaaaaaagatagaaaaagataaacattc |
205 |
Q |
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| T |
45745241 |
ggttaaaaaagatagaaaaagataaacattc |
45745271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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