View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20328_high_3 (Length: 617)
Name: NF20328_high_3
Description: NF20328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20328_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 1 - 601
Target Start/End: Complemental strand, 6203965 - 6203361
Alignment:
| Q |
1 |
aaatccgactcgaaaaccctatctacgacccaatccctgaggatgaatacaccgccttagtcgccagccgccc-cgaacaatcccgctcattcatcgtcg |
99 |
Q |
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| T |
6203965 |
aaatccgactcgaaaaccctatctacgacacaatccctgaggatgaatacaccgccttagtcgccagccgcccgcgaacaatcccgctcatttattgttg |
6203866 |
T |
|
| Q |
100 |
atgacgacggatttggttacaacgatgaaggcgaagaagaggattggtccaaagccggtttctccctttcctcagacgaagaattcgatggtgaatcgga |
199 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6203865 |
atgacgacggatttggttataacgatgaaggcgaagaagaggattggtccaaaaccggtttttccctttcctcagacgaagaattcgatggtgaatcgga |
6203766 |
T |
|
| Q |
200 |
gaaacccaaacggaagaaagagaaagacgcttcacagatcaagcgtcct---gtttcttcttctgcggctaaattatcagctgctgctgctatgatgggc |
296 |
Q |
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|||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6203765 |
gaaacctcaacggaagaaagagaaagatgcttcacagatcaagcgtccttctgtttcttcttctgcggctaaattatcagctgctgctgctatgatgggc |
6203666 |
T |
|
| Q |
297 |
ggatcaagagtttcgtcgatgtttacttctgctaattttaagaaaagtagagatgataaggtttgtgagagtattgtagatgatgttcttaaggagtttg |
396 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6203665 |
ggatcaagagtttcgtcgatgtttacttctgctaattttaagaaaagtagagatgataaggtttgtgagagtattgtagatgatgttcttaaggagtttg |
6203566 |
T |
|
| Q |
397 |
cgccggatgagaacgataaaattagtcggagaaaggttcaatcaaattcgtcttctgttgttaatgatgcacgtattaaggctaaacctaagccctctgc |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
6203565 |
cgccggatgagaacgataaaattagtcggagaaaggttcaatcaaattcgtcttctgttgttaatgatgcacgtattaaggctatacctaagccctctgc |
6203466 |
T |
|
| Q |
497 |
tgaatctgtattaggctcttttgcgagtgaaaatttcacgaaaattggtaatggtggaaatggtgaagttgaatctgttagggttaataaggataaggat |
596 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6203465 |
tgaatctgtattaggctcttttgcgagtgaaaatttcacgaaaattggtaatcgtggaaatggtgaagttgaatctgttagggttaataaggatagggat |
6203366 |
T |
|
| Q |
597 |
aatgg |
601 |
Q |
| |
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||||| |
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| T |
6203365 |
aatgg |
6203361 |
T |
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