View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20328_high_6 (Length: 460)
Name: NF20328_high_6
Description: NF20328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20328_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 16 - 453
Target Start/End: Complemental strand, 42956021 - 42955584
Alignment:
| Q |
16 |
tttttctttatgtgactatgtcaaggaagaaactccgttctttggctatgagctcatcaactcctcaaagagtatcaagtgtggatgttgggatttttgt |
115 |
Q |
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| T |
42956021 |
tttttctttatgtgactatgttaaggaagaaactccgttctttggctatgagctcatcaactcctcaaagagtatcaagtgtggatgttgggatttttgt |
42955922 |
T |
|
| Q |
116 |
gagctactaaactaatcaatgcataagtaaaatgttaagag--aaagataaaggtaaattgtgagaaaatgaaaattttgattaaatgtgtctatcgaaa |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42955921 |
gagctactaaactaatcaatgcataagtaaaatgttaagagaaaaagataaaggtaaattgtgagaaaatgaaaaatttgattaaatgtgtctatcgaaa |
42955822 |
T |
|
| Q |
214 |
atgatatttacaatcggaatttacatgaagagctaataaccctactagcaagcatcgtggcctacaaaaataaagcattgaccgttgtattcggatattc |
313 |
Q |
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| T |
42955821 |
atgatatttacaatcggaatttacatgaagagctaataatcctactagcaagcatcgtggcctac-aaaataaaacattgaccgttgtattcggatattc |
42955723 |
T |
|
| Q |
314 |
tcgctggtagtatgcatatttgtgaccattactagatgcaagtgacatcccgactaattctaattttgcatgcccataggcccaattccatgacactctc |
413 |
Q |
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|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42955722 |
tcgccggtagtatgcgtatttgtgaccattactagatgcaagtgacatcccgactaattctaattttgcatgcccataggccc--ttccatgacactctc |
42955625 |
T |
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| Q |
414 |
gt-gggtacatgtactttgataataaatgttttttcatctc |
453 |
Q |
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| T |
42955624 |
gtggggtacatgtactttgataatgaatgttttttcatctc |
42955584 |
T |
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