View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20328_high_8 (Length: 441)
Name: NF20328_high_8
Description: NF20328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20328_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 3e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 45073847 - 45073677
Alignment:
| Q |
17 |
gttttatgggactgatcatggattgaaagccgcgagtgagacaagagcggagatttttgagcttattagtcagctcgaggctaagtttcccacccctgct |
116 |
Q |
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| T |
45073847 |
gttttatgggactgatcatggatcgaaagccgcgagtgagacaagagcggagatttttgagcttattagtcagctcgaggctaagtttcccacccctgct |
45073748 |
T |
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| Q |
117 |
tccactgatgccttgagtttgctcgatggaaaatggattctcgcgtaagcaaattcgttttactaactttc |
187 |
Q |
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| T |
45073747 |
tccactgatgccttgagtttgctcgatggaaaatggattctcgcgtaagcaaattcgttttactaactttc |
45073677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 254 - 434
Target Start/End: Complemental strand, 45073609 - 45073422
Alignment:
| Q |
254 |
gttagacaatgatttgtgtttggaagggaacttatcatgttctgctta-------cgttaacttagtttgtgttctgcagctaacaaactcatggttgga |
346 |
Q |
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| T |
45073609 |
gttagacaatgatttgtgtttggaagggaacttatcatgttctgcttattattgacgttaacttagtttgtgttctgcagctaacaaactcatggttgga |
45073510 |
T |
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| Q |
347 |
tttattccgcaggtatacatcctatgcaggtttatttccattgctgtcaagtgggctactgccatttcttgaggttgaagaattatct |
434 |
Q |
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| T |
45073509 |
tttattccgcaggtatacatcctatgcaggtttatttccattgctgtcaagtgggctactgccatttcttgaggttgaagaattatct |
45073422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 134; Significance: 1e-69; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 8880707 - 8880538
Alignment:
| Q |
18 |
ttttatgggactgatcatggattgaaagccgcgagtgagacaagagcggagatttttgagcttattagtcagctcgaggctaagtttcccacccctgctt |
117 |
Q |
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| T |
8880707 |
ttttatgggactgctcgtggattgaaagcggcgagtgagacaagagcggagatttttgagcttattagtcagctcgaggctaagaatccaacccccgctt |
8880608 |
T |
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| Q |
118 |
ccactgatgccttgagtttgctcgatggaaaatggattctcgcgtaagcaaattcgttttactaactttc |
187 |
Q |
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| T |
8880607 |
ccactgatgctttgagtttgctcgatggaaaatggattcttgcgtaagcaaattcgttttactaactttc |
8880538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 254 - 434
Target Start/End: Complemental strand, 8880468 - 8880281
Alignment:
| Q |
254 |
gttagacaatgatttgtgtttggaagggaacttatcatgttctgcttac-------gttaactt-agtttgtgttctgcagctaacaaactcatggttgg |
345 |
Q |
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| T |
8880468 |
gttagacaatgatttgtgtttggaagggaa-ttctcatattctgcttattattaatgttaactttagcttgtgttctgcagctaacaaacttatagttgg |
8880370 |
T |
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| Q |
346 |
atttattccgcaggtatacatcctatgcaggtttatttccattgctgtcaagtgggctactgccatttcttgaggttgaagaattatct |
434 |
Q |
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| T |
8880369 |
atttattccgcaggtatacatcctatgcaggtttatttccattgttgtcaagcgggctactgccattactcgaggttgaagaattatct |
8880281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 8884810 - 8884662
Alignment:
| Q |
17 |
gttttatgggactgatcatggattgaaagccgcgagtgagacaagagcggagatttttgagcttattagtcagctcgaggctaagtttcccacccctgct |
116 |
Q |
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| T |
8884810 |
gttttatgggactgatcgtggattgaaagcgacgagtgaaactagagctgagattgttgagcttattactcagctggaagctaagaatcccacacctgct |
8884711 |
T |
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| Q |
117 |
tccactgatgccttgagtttgctcgatggaaaatggattctcgcgtaag |
165 |
Q |
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| T |
8884710 |
tccactgatgccttgagtttgctcaatggaaaatggattcttgcgtaag |
8884662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 317 - 434
Target Start/End: Complemental strand, 8884201 - 8884081
Alignment:
| Q |
317 |
tgttctgcagctaacaaactcatggttggatttat---tccgcaggtatacatcctatgcaggtttatttccattgctgtcaagtgggctactgccattt |
413 |
Q |
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| T |
8884201 |
tgttctgcagctaataaactcgtggtttgatttgtggttcttcaggtatacatcctttgccggtttatttccattgctttcgagcggactactgccatta |
8884102 |
T |
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| Q |
414 |
cttgaggttgaagaattatct |
434 |
Q |
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| T |
8884101 |
cttacggttgaagaaatatct |
8884081 |
T |
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