View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20328_low_1 (Length: 647)
Name: NF20328_low_1
Description: NF20328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20328_low_1 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 284 - 647
Target Start/End: Original strand, 34568465 - 34568828
Alignment:
| Q |
284 |
ttgaatgaaaagtttgtgtgaaatttctctatatataggctttgaggcttaaagacaaggaaaaaaggtcccttttcaacttggctggcttattcagcat |
383 |
Q |
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| T |
34568465 |
ttgaatgaaaagtttgtgtgaaatttctctatatataggctttgaggcttaaagacaaggaaaaaaggtcccttttcaacttggctggcttattcagcat |
34568564 |
T |
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| Q |
384 |
aaataatgcataaaatgtatataatataaattattgattttgtagtgtaagcaaatcaaagctttaccttttaagctttaatttaatttaatttcacata |
483 |
Q |
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| T |
34568565 |
aaataatgcataaaatgtatataatataaattattgattttgtagtgtaagcaaatcaaagctttaccttttaagctttaatttaatttaatttcacata |
34568664 |
T |
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| Q |
484 |
gtttatctgttgctacttgtgacaactgtgacagatccacacggaaattatatggtggttgtttggagatggatgttttgattaagttgctattatagtt |
583 |
Q |
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| T |
34568665 |
gtttatctgttgctacttgtgacaactgtgacagatccacacggaaattatatggtggttgtttggagatggatgttttgattaagttgctattatagtt |
34568764 |
T |
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| Q |
584 |
ccctaattttgcttacaaattaccaacttagtttggtgaagttgataaggattccgctcagatt |
647 |
Q |
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| T |
34568765 |
ccctaattttgcttacaaattaccaactttgtttggtgaagttgataaggattccgctcagatt |
34568828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 34568199 - 34568399
Alignment:
| Q |
18 |
ttatacacttacttgattttctgccaagcccatttgtataactccagaagggttagttatttcatgataagggttttcatcataggctttccatccagca |
117 |
Q |
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| T |
34568199 |
ttatacacttacttgattttctgccaagcccatttgtataactccagaagggttagttatttcatgataagggttttcatcataggctttccatccagca |
34568298 |
T |
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| Q |
118 |
aagtatggagaattttctccatgagtttcagaagttgcaatatttgaaagttcaacacaagggtgttcttgttcaatctcaagacccatactaactattt |
217 |
Q |
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| T |
34568299 |
aagtatggagaattttctccatgagtttcagaagttgcaatatttgaaagttcaacacaagggtgttcttgttcaatctcaagacccatactaactattt |
34568398 |
T |
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| Q |
218 |
t |
218 |
Q |
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| T |
34568399 |
t |
34568399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 100; Significance: 4e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 27 - 178
Target Start/End: Original strand, 42790475 - 42790626
Alignment:
| Q |
27 |
tacttgattttctgccaagcccatttgtataactccagaagggttagttatttcatgataagggttttcatcataggctttccatccagcaaagtatgga |
126 |
Q |
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| T |
42790475 |
tacttgattttctgccaatcccatttgtataacaccagaagagttagttaattcatgataagggttttcatcatatgctttccatccagcaaagtagggt |
42790574 |
T |
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| Q |
127 |
gaattttctccatgagtttcagaagttgcaatatttgaaagttcaacacaag |
178 |
Q |
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| T |
42790575 |
gagttttctccatgagtgtcagaaattgcaatgtttgaaagttgtacacaag |
42790626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 27 - 178
Target Start/End: Original strand, 42800015 - 42800166
Alignment:
| Q |
27 |
tacttgattttctgccaagcccatttgtataactccagaagggttagttatttcatgataagggttttcatcataggctttccatccagcaaagtatgga |
126 |
Q |
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| T |
42800015 |
tacttgattttctgccaatcccatttgtataacaccagaagagttagttaattcatgataagggttttcatcatatgctttccatccagcaaagtagggt |
42800114 |
T |
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| Q |
127 |
gaattttctccatgagtttcagaagttgcaatatttgaaagttcaacacaag |
178 |
Q |
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| T |
42800115 |
gagttttctccatgagtgtcagaaattgcaatgtttgaaagttgtacacaag |
42800166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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