View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20328_low_10 (Length: 412)
Name: NF20328_low_10
Description: NF20328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20328_low_10 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 412
Target Start/End: Complemental strand, 12862074 - 12861679
Alignment:
| Q |
18 |
ataagtgcaatactcaacaacactataatctctaaa-tgagttacgaacataagagttattaatcgatcttaacagtagacattaacactataatcttga |
116 |
Q |
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| T |
12862074 |
ataagtgcaatactcaataacactataatctctaaaatgagttacgaacataagagtgattaatcgatcttaacagtagacattaacactataatcttga |
12861975 |
T |
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| Q |
117 |
atcttgattgaaatttagaaagtaaaatcgatcttaagggtacctccaagcttggaaacaaattccgataagaaacgcaaaataagcatcaatggacgca |
216 |
Q |
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| T |
12861974 |
atcttgattgaaatttagaaagtaaaatcgatcttaagggtacctccaagcttggaaacaaattccgataagaaacgcaaaataagcatcaatggacgca |
12861875 |
T |
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| Q |
217 |
taagcaacttgatgtgcataaagattctctcgattccaattactcctaccaacttcaatactctgatccactttgaaaccaagacatttcctcacaatat |
316 |
Q |
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| T |
12861874 |
taagcaacttgatgtgcataaagattctcttgattccaattactcctaccaacttcaatactctgatccactttgaaaccaagacatttcctcacaattt |
12861775 |
T |
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| Q |
317 |
catccatcgataaacttgaaagagcttcaccattgaactcgtaattcctcagatcctgaggatttttccacatttgcaagcgatgatcaaatctct |
412 |
Q |
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| T |
12861774 |
catccatcgataaacgtgaaagagcttcaccattgaactcgtaattcctcaaatcctgaggatttttccacatttgcaagcgatgatcaaatctct |
12861679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 36 - 412
Target Start/End: Original strand, 12843425 - 12843802
Alignment:
| Q |
36 |
aacactataatctctaaa-tgagttacgaacataagagttattaatcgatcttaacagtagacattaacactataatcttgaatcttgattgaaatttag |
134 |
Q |
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| T |
12843425 |
aacactataatctctaaaatgagttaagaacataagaatgattaatcgatcttaacagtagacattaacactataatcttgaatcttgattgaaatttac |
12843524 |
T |
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| Q |
135 |
aaagtaaaatcgatcttaagggtacctccaagcttggaaacaaattccgataagaaacgcaaaataagcatcaatggacgcataagcaacttgatgtgca |
234 |
Q |
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| T |
12843525 |
aatgtaaaatcaatcttaacggtacctccaagcttgaacgcgaattccgatactaaaagcacaataagcatcaatggacgcataagcaatttgatcttca |
12843624 |
T |
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| Q |
235 |
taaagattctctcgattccaattactcctaccaacttcaatactctgatccactttgaaaccaagacatttcctcacaatatcatccatcgataaacttg |
334 |
Q |
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| T |
12843625 |
taaagattctctgcattccaattgctccttccaacttgtacactctgatccacttcgaaatcaagccaattcctcacaattacatttatcgattcacgtg |
12843724 |
T |
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| Q |
335 |
aaagagcttcaccattgaactcgtaattcctcagatcctgaggatttttccacatttgcaagcgatgatcaaatctct |
412 |
Q |
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| T |
12843725 |
aaagattttcaccattgaacctgtaatgcctcagatcctgaggatctttccacatttgcaagcgatgatcaaatctct |
12843802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 13125745 - 13125837
Alignment:
| Q |
18 |
ataagtgcaatactcaacaacactataatctctaaa-tgagttacgaacataagagttattaatcgatcttaacagtagacattaacactata |
109 |
Q |
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| T |
13125745 |
ataagtgcaatattcaacaacactataatctctaaaatgagttaggaacataagagtgattaatcgatcttaacagtacacattaacactata |
13125837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 131
Target Start/End: Original strand, 13125589 - 13125629
Alignment:
| Q |
91 |
agtagacattaacactataatcttgaatcttgattgaaatt |
131 |
Q |
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| T |
13125589 |
agtagacattaacactatgatcttgaatcttgatagaaatt |
13125629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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