View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20328_low_13 (Length: 363)
Name: NF20328_low_13
Description: NF20328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20328_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 10012359 - 10012707
Alignment:
| Q |
1 |
atataactagtgtgtagctagggaggaatttgattaaagcattgtgttttgacttaacacttcagaaccagttaaaagccttatttcactatgttataaa |
100 |
Q |
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| T |
10012359 |
atataactagtgtgtagctagggaggaatttgattaaagcattgtgttttgacttaacacttcagaaccagttaaaagccttttttcactatgttataaa |
10012458 |
T |
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| Q |
101 |
aatgaggagcacttttgtcagatataaagtatataggttctatgtacctataaaattccaataggaagaggacataaagtaatgatataactttcttgtg |
200 |
Q |
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| T |
10012459 |
aatgaggagcacttttgtcagatataaagtatataggttctatgtacctataaaattccaataggaagaggacataaagtaatgatataactttcttgtg |
10012558 |
T |
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| Q |
201 |
gagggaaagaagagtgtaatatgtggtagagaactttattcattggagaagggaagagtcacataattggctaaatgccttcatgaataccatcaaagaa |
300 |
Q |
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| T |
10012559 |
gagggaaagaagagtgtaatatgtggtagagaactttattcattggagaagggaagagtcacataattggctaaatgccttcatgaataccatcaaagaa |
10012658 |
T |
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| Q |
301 |
tcaaattaggacgggtggcttttacgcaatccaactttgagcatatttt |
349 |
Q |
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| T |
10012659 |
tcaaattaggacgggtggcttttatgcaatccaacttggagcatatttt |
10012707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 42171740 - 42171832
Alignment:
| Q |
5 |
aactagtgtgtagctagggaggaatttgattaaagcattgtgttttgacttaacacttcagaaccagttaaaagccttatttcactatgttat |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
42171740 |
aactagtgtgtagctagggaggaatttgattaaagcattgtgttttgacttaacacttcagaaccagttaaaagcctattttcattatgttat |
42171832 |
T |
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