View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20328_low_15 (Length: 340)
Name: NF20328_low_15
Description: NF20328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20328_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 37961609 - 37961289
Alignment:
| Q |
1 |
cataactcacgagaccaagttcaccatgaaggtgatagaacatagtcaagttgcaccaccaccaaattcacttacatcaccaaccattctacccttaact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37961609 |
cataactcacgagaccaagttcaccatgaaggtgatagaacatagtcaagttgcaccaccaccaaattcacttacatcaccaaccattctacccttaact |
37961510 |
T |
|
| Q |
101 |
ttcttcgacataccatggttttattgtcacccaattcaacgtatcttcttctaccattttcctcatccaactcatcatttccttcaaacaacacttccca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37961509 |
ttcttcgacataccatggttttattgtcacccaattcaacgtatcttcttctaccattttcctcatccaactcatcatttccttcaaacaacacttccca |
37961410 |
T |
|
| Q |
201 |
ttctcaaacactcactttccataaccctcctacacttcttccctttttcctctaacctcatcgtccctccaaattcccataacaccgatccttacatacg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37961409 |
ttctcaaacactcactttccataaccctcctacacttcttccctttttcctctaacctcatcgtccctccaaattcccaaaacaccgatccttacatacg |
37961310 |
T |
|
| Q |
301 |
ttacctcgatgaagactctat |
321 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
37961309 |
ttacctcgatgaagactctat |
37961289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 26 - 322
Target Start/End: Original strand, 37906481 - 37906780
Alignment:
| Q |
26 |
atgaaggtgatagaacatagtcaagttgcaccaccaccaaattcacttacatcaccaaccattctacccttaactttcttcgacataccatggttttatt |
125 |
Q |
| |
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|||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| | || || | || ||||||||||| |||||||||| | |
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| T |
37906481 |
atgaaggtaatagaacatagccaagttgcaccaccaccaaattcacttccatcaccaacaacactccctctcaccttcttcgacatttcatggttttact |
37906580 |
T |
|
| Q |
126 |
gtcacccaa---ttcaacgtatcttcttctaccattttcctcatccaactcatcatttccttcaaacaacacttcccattctcaaacactcactttccat |
222 |
Q |
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|||| || | || ||||||||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||| | |
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| T |
37906581 |
gtcaacccactgttaaacgtatcttcttctaccactttcctcacccaactcatcacttcctccaaacaacacttcctattctcaaacactcactttcctt |
37906680 |
T |
|
| Q |
223 |
aaccctcctacacttcttccctttttcctctaacctcatcgtccctccaaattcccataacaccgatccttacatacgttacctcgatgaagactctatt |
322 |
Q |
| |
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|||||| | ||||||||| || || |||| ||||||||| |||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||| |
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| T |
37906681 |
aacccttcaacacttctttcccttcacctccaacctcatcatccctccaaattcccataacactcctcctttcatacgttaccttgatgaagactctatt |
37906780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 26 - 321
Target Start/End: Original strand, 37914644 - 37914942
Alignment:
| Q |
26 |
atgaaggtgatagaacatagtcaagttgcaccaccaccaaattcacttacatcaccaaccattctacccttaactttcttcgacataccatggttttatt |
125 |
Q |
| |
|
|||||||||||||| || | |||| || |||||||||||| ||||||| |||||||||| | | || | |||||||| ||||| | |||||||| | |
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| T |
37914644 |
atgaaggtgatagagcagactcaaatttcaccaccaccaagttcacttccatcaccaacgagaatccctctcactttctttgacatttcttggttttact |
37914743 |
T |
|
| Q |
126 |
gtca---cccaattcaacgtatcttcttctaccattttcctcatccaactcatcatttccttcaaacaacacttcccattctcaaacactcactttccat |
222 |
Q |
| |
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| | ||| || |||| |||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||| | |
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| T |
37914744 |
gcaaacccccccttaaacgcatcttcttctaccactttcctcacccaactcatcacttcctccaaacaacacttcctattctcaaacactcactttcctt |
37914843 |
T |
|
| Q |
223 |
aaccctcctacacttcttccctttttcctctaacctcatcgtccctccaaattcccataacaccgatccttacatacgttacctcgatgaagactctat |
321 |
Q |
| |
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|||||| | ||||||||| || || |||| ||||||||| |||||||||||||||||||||| ||||| |||||||||||| |||||||||||||| |
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| T |
37914844 |
aacccttcaacacttctttcccttcacctccaacctcatcatccctccaaattcccataacactcctcctttcatacgttaccttgatgaagactctat |
37914942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 80 - 240
Target Start/End: Original strand, 3782807 - 3782967
Alignment:
| Q |
80 |
ccaaccattctacccttaactttcttcgacataccatggttttattgtcacccaattcaacgtatcttcttctaccattttcctcatccaactcatcatt |
179 |
Q |
| |
|
||||||||||| ||| | || ||||| ||||| |||||||||| |||| | ||| |||| |||||||||||||| |||||||||||||||||||| | |
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| T |
3782807 |
ccaaccattcttcccctcacattcttggacattccatggttttgctgtcgaaccattaaacgcatcttcttctaccactttcctcatccaactcatcact |
3782906 |
T |
|
| Q |
180 |
tccttcaaacaacacttcccattctcaaacactcactttccataaccctcctacacttctt |
240 |
Q |
| |
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| || ||||||| ||||||||||||||||||||| |||||||| |||||| ||||||||| |
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| T |
3782907 |
ttctccaaacaatacttcccattctcaaacactctctttccatcaccctcgaacacttctt |
3782967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 255
Target Start/End: Complemental strand, 4957855 - 4957761
Alignment:
| Q |
161 |
cctcatccaactcatcatttccttcaaacaacacttcccattctcaaacactcactttccataaccctcctacacttcttccctttttcctctaa |
255 |
Q |
| |
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|||||| |||| || || ||||||||||| |||| || ||||||||| |||| |||||| | || |||| ||| ||||||||||| |||||||| |
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| T |
4957855 |
cctcattcaacacaacacttccttcaaacttcactaccaattctcaaaaactctctttccctcactctccaacatttcttccctttctcctctaa |
4957761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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