View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20328_low_16 (Length: 323)
Name: NF20328_low_16
Description: NF20328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20328_low_16 |
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| [»] scaffold0728 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 316
Target Start/End: Complemental strand, 31810865 - 31810568
Alignment:
| Q |
19 |
tgaaggatgaagcaaagactcaaaaacaccatgtgaatactcacatgaatctttcttctggcatgttcctttgcgaaactcggggcacggaacacagcta |
118 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31810865 |
tgaaggatgaagcaaagactcaaaaataccatgtgaatactcacatgaatctttcttctggcatgttcctttgcgaaactcggggcacggaacacagcta |
31810766 |
T |
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| Q |
119 |
taaggatacttccttggatctctcctcctagcattctcccctggatgaacaaatggacactcagtccaatcatgagtgtaaccccttgaacaagtcttta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31810765 |
taaggatacttccttggatctctcctcctagcattctcccctggatgaacaaatggacactcagtccaatcatgagtgtaaccccttgaacaagtcttta |
31810666 |
T |
|
| Q |
219 |
ctttgaaactatacattctaaattcatctgttacaaaaacaccattgtttatatcaggcaatgatgtatcaatagcatatcctgaatctttcttctca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31810665 |
ctttgaaactatacattctaaattcatctgttacaaaaacaccattgtttatatcaggcaatgatgtatcaatagcatatcctgaatctttcttctca |
31810568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 155 - 249
Target Start/End: Complemental strand, 25812709 - 25812616
Alignment:
| Q |
155 |
tcccctggatgaacaaatggacactcagtccaatcatgagtgtaaccccttgaacaagtctttactttgaaactatacattctaaattcatctgt |
249 |
Q |
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||||||||||||||||| || ||||||||||||||||||| ||| |||||||||||| ||| |||||||| || |||| |||||||||||||| |
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| T |
25812709 |
tcccctggatgaacaaaggggcactcagtccaatcatgagaataa-cccttgaacaaggcttcactttgaatgtaaacatcctaaattcatctgt |
25812616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 9314769 - 9314826
Alignment:
| Q |
137 |
tctctcctcctagcattctcccctggatgaacaaatggacactcagtccaatcatgag |
194 |
Q |
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| T |
9314769 |
tctctccttcgagcattctctccaggatgcacaaaaggacactcagtccaatcatgag |
9314826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 35 - 293
Target Start/End: Complemental strand, 35643855 - 35643597
Alignment:
| Q |
35 |
gactcaaaaacaccatgtgaatactcacatgaatctttcttctggcatgttcctttgcgaaactcggggcacggaacacagctataaggatacttccttg |
134 |
Q |
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||||| ||||||||||||| ||||||||| ||||| |||||||| | |||||||||||||| ||||| ||||||||||| ||||| || ||||||| |
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| T |
35643855 |
gactcgaaaacaccatgtgcatactcacaagaatcccctttctggcaagaccctttgcgaaactctgggcagggaacacagctgtaagggtatttccttg |
35643756 |
T |
|
| Q |
135 |
gatctctcctcctagcattctcccctggatgaacaaatggacactcagtccaatcatgagtgtaaccccttgaacaagtctttactttgaaactatacat |
234 |
Q |
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| ||||||||||| |||||||| |||||||||||||| |||||||| |||||||| |||| |||| |||| || || | ||| || |||||||| ||||| |
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| T |
35643755 |
ggtctctcctccttgcattctcacctggatgaacaaagggacactccgtccaatcgtgagagtaagccctcgagcatggcttcaccttgaaactgtacat |
35643656 |
T |
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| Q |
235 |
tctaaattcatctgttacaaaaacaccattgtttatatcaggcaatgatgtatcaatag |
293 |
Q |
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||||| ||||||| | || | ||||| |||||||| || ||||| ||| ||||||||| |
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| T |
35643655 |
cctaaactcatctgatccatatacaccgttgtttatgtcgggcaacgatatatcaatag |
35643597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 85 - 246
Target Start/End: Complemental strand, 30122405 - 30122244
Alignment:
| Q |
85 |
tcctttgcgaaactcggggcacggaacacagctataaggatacttccttggatctctcctcctagcattctcccctggatgaacaaatggacactcagtc |
184 |
Q |
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|||||| |||||||| || || || || ||||||||| |||| ||||||||||| | | ||| ||||| ||||||||||||||||| |||||||| ||| |
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| T |
30122405 |
tcctttccgaaactcaggacaagggacgcagctataatgatatttccttggatcgcgtcgccttgcattttcccctggatgaacaaaaggacactcggtc |
30122306 |
T |
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| Q |
185 |
caatcatgagtgtaaccccttgaacaagtctttactttgaaactatacattctaaattcatc |
246 |
Q |
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|||||||||| ||| |||||||||||| ||| |||||||| ||||||| ||||| ||||| |
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| T |
30122305 |
caatcatgagaataagcccttgaacaaggcttcactttgaatgtatacatcctaaactcatc |
30122244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 149 - 249
Target Start/End: Complemental strand, 33647913 - 33647813
Alignment:
| Q |
149 |
gcattctcccctggatgaacaaatggacactcagtccaatcatgagtgtaaccccttgaacaagtctttactttgaaactatacattctaaattcatctg |
248 |
Q |
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||||||||||| ||||||||||| || ||||||||||||||||||| ||| |||||||||||| ||| |||||||| || |||| ||||||||||||| |
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| T |
33647913 |
gcattctccccaggatgaacaaaggggcactcagtccaatcatgagaataagcccttgaacaaggcttcactttgaatgtaaacatcctaaattcatctg |
33647814 |
T |
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| Q |
249 |
t |
249 |
Q |
| |
|
| |
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| T |
33647813 |
t |
33647813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 19409114 - 19409057
Alignment:
| Q |
137 |
tctctcctcctagcattctcccctggatgaacaaatggacactcagtccaatcatgag |
194 |
Q |
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|||||||||| ||| ||||| || ||||| ||| |||||||||||||||||||||||| |
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| T |
19409114 |
tctctcctccgagccttctctccgggatgcacatatggacactcagtccaatcatgag |
19409057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 192
Target Start/End: Complemental strand, 36456370 - 36456267
Alignment:
| Q |
89 |
ttgcgaaactcggggcacggaacacagctataaggatacttccttggatctctcctcctagcattctcccctggatgaacaaatggacactcagtccaat |
188 |
Q |
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|||||||| || || || || |||||||| ||| ||||||| || || || || |||| ||||||||||||||||||||||| || || |||||||||| |
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| T |
36456370 |
ttgcgaaaatcaggacaagggacacagctgtaatgatactttctcgggtcccttctccgggcattctcccctggatgaacaaaagggcattcagtccaat |
36456271 |
T |
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| Q |
189 |
catg |
192 |
Q |
| |
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|||| |
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| T |
36456270 |
catg |
36456267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0728 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0728
Description:
Target: scaffold0728; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 4680 - 4623
Alignment:
| Q |
137 |
tctctcctcctagcattctcccctggatgaacaaatggacactcagtccaatcatgag |
194 |
Q |
| |
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|||||||||| ||| ||||| || ||||| ||| |||||||||||||||||||||||| |
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| T |
4680 |
tctctcctccgagccttctctccgggatgcacatatggacactcagtccaatcatgag |
4623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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