View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20328_low_18 (Length: 281)
Name: NF20328_low_18
Description: NF20328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20328_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 1684462 - 1684214
Alignment:
| Q |
19 |
ataacgactaagagtgtgaaatacatgccattctggctctctgtgtttaacttcctcaatggactttgctggacaacatatgctctgctccatccctttg |
118 |
Q |
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| T |
1684462 |
ataacgactaagagtgtgaaatacatgccattctggctctctgtgtttaacttcctcaatggactttgctggacaacatatgctctgctccatccctttg |
1684363 |
T |
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| Q |
119 |
acctttatgttctggtaatttatattcctatagtattgttgtgacttgtgagttaataattggatgaatgatttatacttaacccatattaattaattaa |
218 |
Q |
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| T |
1684362 |
acctttatgttctggtaatttatattcctatagtattgttgtgacttgtgagttaataattggatgaatgatttatacttaacccatattaattaata-- |
1684265 |
T |
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| Q |
219 |
tgtacattttcactgactactacagatcagcaatggtattggagtaatctctg |
271 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1684264 |
--tacactttcactgactactgcagatcagcaatggtattggagtaatctctg |
1684214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 28 - 180
Target Start/End: Complemental strand, 1694888 - 1694736
Alignment:
| Q |
28 |
aagagtgtgaaatacatgccattctggctctctgtgtttaacttcctcaatggactttgctggacaacatatgctctgctccatccctttgacctttatg |
127 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
1694888 |
aagagtgtgaaatacatgccattctggctctctcttaccaacttcctcaatggactttgctggacaacatatgctctgctccacccctttgacatttatg |
1694789 |
T |
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| Q |
128 |
ttctggtaatttatattcctatagtattgttgtgacttgtgagttaataattg |
180 |
Q |
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| T |
1694788 |
ttctggtaatttatattcctatagtattgttgtgatttgtgagttaataattg |
1694736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 1699980 - 1699904
Alignment:
| Q |
28 |
aagagtgtgaaatacatgccattctggctctctgtgtttaacttcctcaatggactttgctggacaacatatgctct |
104 |
Q |
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||||||||||||||||||||||| ||||||||| | |||||||||||||| | |||||||||||||||||||| |
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| T |
1699980 |
aagagtgtgaaatacatgccattttggctctctctaaccaacttcctcaatggtttgtgctggacaacatatgctct |
1699904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 1694713 - 1694635
Alignment:
| Q |
188 |
gatttatacttaacccatattaattaattaatgtacattttcactgactactacagatcagcaatggtattggagtaatctctg |
271 |
Q |
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| T |
1694713 |
gatttatacttaacccatgtt-----attaatatacatttttactgattattgcagatcagtaatggtattggagtaatctctg |
1694635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 138
Target Start/End: Complemental strand, 1674291 - 1674181
Alignment:
| Q |
28 |
aagagtgtgaaatacatgccattctggctctctgtgtttaacttcctcaatggactttgctggacaacatatgctctgctccatccctttgacctttatg |
127 |
Q |
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||||||||||||||||||||||||| || |||| || || ||| || |||||| | || ||||||||||||||||| || | ||||| ||| ||||| |
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| T |
1674291 |
aagagtgtgaaatacatgccattcttgccctctctggctatctttcttaatggattgtgttggacaacatatgctctcatcaaccccttcgacatttatc |
1674192 |
T |
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| Q |
128 |
ttctggtaatt |
138 |
Q |
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| T |
1674191 |
tcctggtaatt |
1674181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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