View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20328_low_20 (Length: 270)
Name: NF20328_low_20
Description: NF20328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20328_low_20 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 12 - 270
Target Start/End: Complemental strand, 43488705 - 43488447
Alignment:
| Q |
12 |
aagaaaggtggtgggcttgctagaagttcaagttgcattcctgctattacaagagatatcaatgatttcacaatcaccaattaatcttatcttataacat |
111 |
Q |
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| T |
43488705 |
aagaaaggtggtgggcttgctagaagttcaagttgcattcctgctattacaagagatatcaatgatttcacaatcaccaattaatcttatcttataacat |
43488606 |
T |
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| Q |
112 |
agaagttaaccgtatgtttgaattgatggtaagtttaatagaatctcagtgagtcaccgtaattttattcaataatattacggtaagaccaccatgattt |
211 |
Q |
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| T |
43488605 |
agaagttaaccgtatgtttgaattgatggtaagtttaatagaatctcagcgagtcaccgtaattttattcaataatattacggtgagaccatcatgattt |
43488506 |
T |
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| Q |
212 |
catcaactcaacgtgatttcagacatgcattaagtgttttaattctgtattgattaatt |
270 |
Q |
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| T |
43488505 |
catcaactcaacgtgatttcagacatgcattaagtgttttaattctgtattgattaatt |
43488447 |
T |
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