View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20328_low_24 (Length: 243)
Name: NF20328_low_24
Description: NF20328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20328_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 35 - 241
Target Start/End: Original strand, 56275492 - 56275704
Alignment:
| Q |
35 |
atcctaggactacagtacactttcatttatgggtacaacagtacactactat--tctaaccatgatgaaaacaatgaaaatgaaggtgatcgatcacatg |
132 |
Q |
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| T |
56275492 |
atcctaggactacagtacactttcatttatgggtacaacaatacagtactatattctaaccaggatgaaaacaatgaaaatgaaggtgatcgatcacatg |
56275591 |
T |
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| Q |
133 |
ataaagttgagtattttcatgatgccggtcataat--gaaaattaataatatgatgatgattacttttgccgataaacaaccaactc--tttatttcatt |
228 |
Q |
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| T |
56275592 |
ataaaattgagtattttcatgatgtcggtcataataaaaaaattaataatatgatgattattacttttgccgataaacaaccaactcggtttattccatt |
56275691 |
T |
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| Q |
229 |
agacatttatgat |
241 |
Q |
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||||||||||||| |
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| T |
56275692 |
agacatttatgat |
56275704 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 178
Target Start/End: Original strand, 8471391 - 8471459
Alignment:
| Q |
105 |
aatgaaaatgaaggtgatcgatcacatgataaagttgagtattttcatgatgccggtcataatgaaaattaata |
178 |
Q |
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| T |
8471391 |
aatgaaaatgaaggtgatc----acatgatacaattgaacattttcatgatga-ggtcataatgaaaattaata |
8471459 |
T |
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