View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20328_low_4 (Length: 471)
Name: NF20328_low_4
Description: NF20328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20328_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 13 - 455
Target Start/End: Complemental strand, 30040060 - 30039619
Alignment:
| Q |
13 |
taggatgaagaggaagtagtgaaggacaaaaatgcaatgaggtttcataaagacaaaacaaaggaagacacttgtggttcctgctcaatttttgttgatt |
112 |
Q |
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| T |
30040060 |
taggatgaagaggaagtagtgaaggacaaaaatgcaatgaggtttcataaagacaaaacaaaggaagacacttgtggttcctgctcaatttttgttgatt |
30039961 |
T |
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| Q |
113 |
atttttcctgtcttaattagaagctaatccaattcaatactgttgcatatgccacgtatcaatatattcacaatcatagactcatagtcttcttctgact |
212 |
Q |
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| T |
30039960 |
atttttcctgtcttaattagaagctaatccaattcaatactgttgcatatgccacgtatcaatatattcacaatcatagactcatagtcttcttctgact |
30039861 |
T |
|
| Q |
213 |
tttcaaactctttaacttagccacaaacgaattgctatgttaccttttcttcacttcatagcttgcaagtcgcttttaactgtcttgtcatcattaatta |
312 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30039860 |
tt-caaactctttaacttagccacaaacgaattgctatgttaccctttcttcacttcatagcttgcaagtcgcttttaactgtcttgtcatcattaatta |
30039762 |
T |
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| Q |
313 |
attttgcttgcttagtgaccaatagaaaagaaatcttgcaacttgttcatcgttcctttccattgatgttgctaagtcatgtgtaaattatacccaataa |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30039761 |
attttgcttgcttagtgaccaatagaaaagaaatcttgcaacttgttcatcgttcctttccattgatgttgctaagtcatgtgtaaattatacccaataa |
30039662 |
T |
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| Q |
413 |
taaatgatagggtagcatttatatatttattgcatgcacattt |
455 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30039661 |
taaatgatagggtagcatttatatacctattgcatgcacattt |
30039619 |
T |
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