View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20328_low_7 (Length: 456)
Name: NF20328_low_7
Description: NF20328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20328_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 38 - 444
Target Start/End: Complemental strand, 40846681 - 40846279
Alignment:
| Q |
38 |
aagctgttggatataattattacacagtctagattacaacttcttcaaaccattgactttatttttataagcataatttttattgaaagagactaaacta |
137 |
Q |
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||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40846681 |
aagctgttggata--attattaca--gtctagattacaacttcttcaaaccattgactttatttttataagcataatttttattgaaagagactaaacta |
40846586 |
T |
|
| Q |
138 |
gcacaagatgtgcaaagtagctctaagaccatcatacagttcaatgtgaagacagtgccttcctcaacactaacacgagaaataccctgcaacatataac |
237 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40846585 |
gcacaagatgtgcaaagtagctctaagaccatcacacagttcaatgtgaagacagtgccttcctcaacactaacacgagaaataccctgcaacatataac |
40846486 |
T |
|
| Q |
238 |
agatttccataatgcatcttcaaagaactttaaattgaggttgttacactccatcaaatacaccgcattgttaaacaaattaaatgagacactttcacta |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| || |
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| T |
40846485 |
agatttccataatgcatcttcaaagaactttaaattgaggttgttacactccatcaaatacaccgcatcgttaaccaaattaaatgagacactttcatta |
40846386 |
T |
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| Q |
338 |
gaaccttggaatcatcgccaaatgagacattgccacttactgattcatcaagctccacaaacattctccttttttcacacatatggttgaattttctttg |
437 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40846385 |
gaaccttgggatcatcgccaaatgagacattgccacttactgattcatcaagctccacaaacattctccttttttcacacatatggttgaattttctttg |
40846286 |
T |
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| Q |
438 |
attcctt |
444 |
Q |
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||||||| |
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| T |
40846285 |
attcctt |
40846279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 330 - 422
Target Start/End: Original strand, 4890548 - 4890640
Alignment:
| Q |
330 |
tttcactagaaccttggaatcatcgccaaatgagacattgccacttactgattcatcaagctccacaaacattctccttttttcacacatatg |
422 |
Q |
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||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| |||||||||| |
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| T |
4890548 |
tttcactggaatcttggaatcatcgccaaatgagacattgccacacactgattcatcaagctctacaaacatgctccttttcccacacatatg |
4890640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 426
Target Start/End: Complemental strand, 34646063 - 34645979
Alignment:
| Q |
342 |
cttggaatcatcgccaaatgagacattgccacttactgattcatcaagctccacaaacattctccttttttcacacatatggttg |
426 |
Q |
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||||||||| ||| ||||||||||| | ||||||| |||||||||||| | || ||||| ||||| ||| |||||||||||||| |
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| T |
34646063 |
cttggaatcgtcgacaaatgagacaattccacttaatgattcatcaagttttacgaacatgctcctatttccacacatatggttg |
34645979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 394
Target Start/End: Original strand, 21745757 - 21745796
Alignment:
| Q |
355 |
ccaaatgagacattgccacttactgattcatcaagctcca |
394 |
Q |
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||||||||||||||| ||||||||||||||||||| |||| |
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| T |
21745757 |
ccaaatgagacattgtcacttactgattcatcaagatcca |
21745796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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