View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20329_high_2 (Length: 499)
Name: NF20329_high_2
Description: NF20329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20329_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 19 - 480
Target Start/End: Complemental strand, 3436085 - 3435624
Alignment:
| Q |
19 |
aaatgaagatcctctgacatatttttagaacgaaaggcaccatcctcattattatcttgcaaattaaattcttgttcccggaacttgtcctcctccatcc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3436085 |
aaatgaagatcctctgacatatttttagaacgaaaggcaccatcctcattattatcttgcaaattaaattcttgttcccggaacttgtcctcctccatcc |
3435986 |
T |
|
| Q |
119 |
attcctccgtcatctcattcaccatattttctacatcattattcacaacaaaaacaacatgtacttccgctttttcactttcatcacaaatcgaagcatc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3435985 |
attcctccgtcatctcattcaccatattttctacatcattattcacaacaaaaacaacatgtacttccgctttttcactttcatcacaaatcgaagcatc |
3435886 |
T |
|
| Q |
219 |
ctcaaacaaacaagcatcctcgcctaatgagaatccccattcctccattattttaatattcaccaaatcatcatcaaccaacaaatcagcttcgtcatta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3435885 |
ctcaaacaaacaagcatcctcgcctaatgagaatccccattcctccattattttaatattcaccaaatcatcatcaaccaacaaatcagcttcgtcatta |
3435786 |
T |
|
| Q |
319 |
ataacctctagggatgaagttgccaataaaatacgaacataatcaaaccattctctagcaaccgtgcagttatctaccctcaacaatcgaccaaaatcaa |
418 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3435785 |
ataatctctagggatgaagttgccaataaaatacgaacataatcaaaccattctctagcaaccgtgcaattatctaccctcaacaatcgaccaaaatcaa |
3435686 |
T |
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| Q |
419 |
aagcacataatctnnnnnnnnttccattccatgcttgcaaagaaactccataaattcgaatc |
480 |
Q |
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||||||||||||| | |||||||||||||||||||||||||| |||||||||||| |
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| T |
3435685 |
aagcacataatctaaaaaatttcccattccatgcttgcaaagaaactccgtaaattcgaatc |
3435624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 105 - 431
Target Start/End: Original strand, 17964044 - 17964370
Alignment:
| Q |
105 |
gtcctcctccatccattcctccgtcatctcattcaccatattttctacatcattattcacaacaaaaacaacatgtacttccgctttttcactttcatca |
204 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||| ||| ||||| |||||||||||||| || || |||| | || |||| |||| | ||| || |
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| T |
17964044 |
gtcctcctccatccattcctccgacatctcattcaccaaattatctacgtcattattcacaactaagtcaccatgatcctctgcttcttcattatcacca |
17964143 |
T |
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| Q |
205 |
caaatcgaagcatcctcaaacaaacaagcatcctcgcctaatgagaatccccattcctccattattttaatattcaccaaatcatcatcaaccaacaaat |
304 |
Q |
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||| || | |||||||||| ||||||||||||||||| || | || ||| | ||||| | ||||||||||||| |||| |||||||||||||||||| |
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| T |
17964144 |
caacccggatcatcctcaaataaacaagcatcctcgccgaacggaaaacccaaatcctctacaattttaatattcatcaaagcatcatcaaccaacaaat |
17964243 |
T |
|
| Q |
305 |
cagcttcgtcattaataacctctagggatgaagttgccaataaaatacgaacataatcaaaccattctctagcaaccgtgcagttatctaccctcaacaa |
404 |
Q |
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| || ||| | || |||||||| | ||| |||| || ||||||||||||| | |||||| ||| ||||||| ||||||||| |||| |||| |||| |
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| T |
17964244 |
ctgcgtcggcttttataacctccaaggaagaagctggcaataaaatacgagcgtaatcatacctttctctataaaccgtgcaactatccacccgtaacat |
17964343 |
T |
|
| Q |
405 |
tcgaccaaaatcaaaagcacataatct |
431 |
Q |
| |
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||||| ||||||||||||||||||||| |
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| T |
17964344 |
tcgactaaaatcaaaagcacataatct |
17964370 |
T |
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