View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20329_high_3 (Length: 436)
Name: NF20329_high_3
Description: NF20329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20329_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 424
Target Start/End: Complemental strand, 33171420 - 33171007
Alignment:
| Q |
18 |
gaaattgggttgacgagaaccataggcggaatgaagagctcagaaatgcatttcaaactaatgcgtccgaagtgcagctccgtctagttgttcagagtgt |
117 |
Q |
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| T |
33171420 |
gaaattgggttgacgagaaccataggcggaatgaagagctcagaaatgcatttcaaactaatgcgtccgaagtgcagctccgtctagttgttcagagtgt |
33171321 |
T |
|
| Q |
118 |
cttgaatcattactcggatcttttcagaatgaaaacggatgctgcaaaggctgatcccctctatttaatctccggtgtgtggaaaccatccgtagagcga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33171320 |
cttgaatcattactcggatcttttcagaatgaaaacggatgctgcaaaggctgatcccctctatttaatctccggtgtgtggaaaccatccgtagagcga |
33171221 |
T |
|
| Q |
218 |
cttttcctatggatcggaggatctcgcccatcccagcttctaaatgtacaaatctgatcttaatagcgaattagattaaaagtcggt--------aacct |
309 |
Q |
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| T |
33171220 |
cttttcctatggatcggaggatctcggccatcacagcttctaaatgtacaaatctgatcttaatagcaaattagattaaaagtcggtactctcgaaacct |
33171121 |
T |
|
| Q |
310 |
caacgaatcactaaccattattagnnnnnnnnnctgctacagctcattgtgccacaacttgagcctttgtctgatgaacagatgtttagcattaaaaaac |
409 |
Q |
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| T |
33171120 |
caacgaatcactaaccattattag-ttttttttctgctacagctcattgtgccacaacttgagcctttgtctgatgaacagatgtttagcatcaaaaaac |
33171022 |
T |
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| Q |
410 |
ttcacctgtcgtctc |
424 |
Q |
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| T |
33171021 |
ttcacctgtcgtctc |
33171007 |
T |
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Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 59 - 267
Target Start/End: Complemental strand, 25355986 - 25355778
Alignment:
| Q |
59 |
agaaatgcatttcaaactaatgcgtccgaagtgcagctccgtctagttgttcagagtgtcttgaatcattactcggatcttttcagaatgaaaacggatg |
158 |
Q |
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||||||||||| ||||||||||| || || | || || | |||| ||||| ||||| |||||| || ||||| ||||||||||||||||| | || | |
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| T |
25355986 |
agaaatgcattgcaaactaatgcatctgatatacaacttcatctacttgttgagagtagcttgaaccaatactcaaatcttttcagaatgaaagctgaag |
25355887 |
T |
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| Q |
159 |
ctgcaaaggctgatcccctctatttaatctccggtgtgtggaaaccatccgtagagcgacttttcctatggatcggaggatctcgcccatcccagcttct |
258 |
Q |
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|||||||||||||| ||||||||||||| || || |||||| || | || || || ||||| || ||||||||||||||||| ||||| || |||| |
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| T |
25355886 |
ctgcaaaggctgatgttttctatttaatctctggcgtatggaaatcaccggtcgaacgcctttttctttggatcggaggatctcgtccatcacaaattct |
25355787 |
T |
|
| Q |
259 |
aaatgtaca |
267 |
Q |
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||||||||| |
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| T |
25355786 |
aaatgtaca |
25355778 |
T |
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